Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e13r
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.21 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 405 KFPASFVVSRAATTNS--RAVNVRYTAP 328
           KFP SF +SR A  N+  R   +RY  P
Sbjct: 406 KFPPSFRISRVAAYNTYGRNAGLRYRGP 433


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 138 TRSFCFFVCTKNSFSPFF 85
           T +FC   C  N  +PFF
Sbjct: 41  TNAFCLPFCGPNVINPFF 58


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 138 TRSFCFFVCTKNSFSPFF 85
           T +FC   C  N  +PFF
Sbjct: 40  TNAFCLPFCGPNVINPFF 57


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 36  KKKDKEAS**IRESLIKKMGRTNFLCKRKNKNFVSLHVNVQNMHFSV 176
           KKKD E +  IRE +     RT F  KR+     S+ +N   + F V
Sbjct: 149 KKKDIEEALKIREEIRVDPFRTGFEHKRQP---TSIDLNAVRLCFQV 192


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 36  KKKDKEAS**IRESLIKKMGRTNFLCKRKNKNFVSLHVNVQNMHFSV 176
           KKKD E +  IRE +     RT F  KR+     S+ +N   + F V
Sbjct: 149 KKKDIEEALKIREEIRVDPFRTGFEHKRQP---TSIDLNAVRLCFQV 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,063
Number of Sequences: 438
Number of extensions: 2033
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)