Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e13f
(471 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08) 27 5.9
SB_53213| Best HMM Match : RVP (HMM E-Value=0.11) 27 7.8
SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21) 27 7.8
SB_47242| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 7.8
SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_31616| Best HMM Match : rve (HMM E-Value=6.9e-21) 27 7.8
SB_28476| Best HMM Match : RVT_1 (HMM E-Value=1.1e-19) 27 7.8
SB_27473| Best HMM Match : Endothelin (HMM E-Value=8.5) 27 7.8
SB_24272| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 7.8
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11) 27 7.8
SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_55956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_50912| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 7.8
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 7.8
SB_34858| Best HMM Match : RVT_1 (HMM E-Value=2.9e-19) 27 7.8
SB_32461| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 7.8
SB_22228| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 7.8
SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 27 7.8
SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17) 27 7.8
>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1787
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 352 NGENEFFVQTKKQKLRVFACKRPEYAF*RPQTCTVKLNPLRGAFTN*RFTKVKPTPPPVR 173
NGE+E F+Q + R+ + + + P T +RG TK+ TPP
Sbjct: 1211 NGESEKFMQILNKTERIATLEGKDKSTPHPATGVTPYEAMRGVSVR---TKLDYTPPTTE 1267
Query: 172 RT 167
RT
Sbjct: 1268 RT 1269
>SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSESIV 11
PP + ++ C+DPR AL R V + A L A TT A + YW E V
Sbjct: 238 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVEDRV 296
>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
Length = 382
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 273 NAYSGR-LHAKTRSFCFFVCTKNSFSP 350
N SGR + +RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299
>SB_53213| Best HMM Match : RVP (HMM E-Value=0.11)
Length = 344
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 289 PPSKDSVRICIDPRDLNKALKRPHYTMVTVEQVANRLSGATMFTTLDACSGYWQVE 344
>SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)
Length = 1329
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 504 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 559
>SB_47242| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 450
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 194 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 249
>SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 34 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 89
>SB_31616| Best HMM Match : rve (HMM E-Value=6.9e-21)
Length = 1183
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 343 PPSKDSVRICIDPRDLNKALKRPHYTMVTVEQVANRLSGATMFTTLDACSGYWQVE 398
>SB_28476| Best HMM Match : RVT_1 (HMM E-Value=1.1e-19)
Length = 332
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 119 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 174
>SB_27473| Best HMM Match : Endothelin (HMM E-Value=8.5)
Length = 249
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 194 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 249
>SB_24272| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1197
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 357 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 412
>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
Length = 813
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 758 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 813
>SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 331 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 386
>SB_55956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 194 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 249
>SB_50912| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 302
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 34 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 89
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 441 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 496
>SB_34858| Best HMM Match : RVT_1 (HMM E-Value=2.9e-19)
Length = 201
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 34 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 89
>SB_32461| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 320
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 153 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 208
>SB_22228| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 302
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 34 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 89
>SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 1234
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 184 PPVRRTLANCVDPR-TRTALTRLPAGAVYLTLTARELVVAARLTTKLAGNLYWYSE 20
PP + ++ C+DPR AL R V + A L A TT A + YW E
Sbjct: 196 PPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACSGYWQVE 251
>SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17)
Length = 362
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 190 TPPPVRRTLANCVDPRT 140
TPPPV ++CVDP T
Sbjct: 139 TPPPVEYISSDCVDPST 155
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,751
Number of Sequences: 59808
Number of extensions: 235402
Number of successful extensions: 671
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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