Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e13f
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   6.4  
At5g65380.1 68418.m08223 ripening-responsive protein, putative s...    27   8.5  
At1g29390.2 68414.m03593 stress-responsive protein, putative sim...    27   8.5  
At1g29390.1 68414.m03594 stress-responsive protein, putative sim...    27   8.5  

>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 247 LQYKFGDAKMHILDVYMQRHE 309
           + Y F D KMHILD ++ ++E
Sbjct: 256 VNYCFTDCKMHILDKHVHKYE 276


>At5g65380.1 68418.m08223 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 259 FGDAKMHILDVYMQRHEVFVF 321
           FG  K H+L VYMQR  + +F
Sbjct: 107 FGAKKYHMLGVYMQRSWIVLF 127


>At1g29390.2 68414.m03593 stress-responsive protein, putative
           similar to cold acclimation WCOR413-like protein gamma
           form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
           to stress-regulated protein SAP1 [Xerophyta viscosa]
           gi|21360378|gb|AAM47505
          Length = 183

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 218 RERAAKRI*LYSTSLGTLKCIFWTFTCKDTKFLFFR---LHKKFVLPIFLI 361
           R +    +  Y+T + ++  + W  T      +F R   +HK FV+P+F +
Sbjct: 23  RRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFAL 73


>At1g29390.1 68414.m03594 stress-responsive protein, putative
           similar to cold acclimation WCOR413-like protein gamma
           form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
           to stress-regulated protein SAP1 [Xerophyta viscosa]
           gi|21360378|gb|AAM47505
          Length = 226

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 218 RERAAKRI*LYSTSLGTLKCIFWTFTCKDTKFLFFR---LHKKFVLPIFLI 361
           R +    +  Y+T + ++  + W  T      +F R   +HK FV+P+F +
Sbjct: 66  RRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFAL 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,857,939
Number of Sequences: 28952
Number of extensions: 165561
Number of successful extensions: 383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)