Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e12r
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   1.5  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   2.0  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   2.7  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   4.7  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   6.3  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 166 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 71
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 193 HDWDQKPSHAKNGSAYDVNY*GSEK 267
           HD  ++PSH K+ SA  ++   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 70  DSTNSVRHYISLSKTDNCCSSI 5
           DS+NS  +  S+   DNCC  I
Sbjct: 99  DSSNSHHNNESICNNDNCCREI 120


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 254 RAVKNPMILKSQ*LLT 301
           RAVKNPMIL+ +  LT
Sbjct: 12  RAVKNPMILEKERQLT 27


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 133 PVVLREFNGRKHYIKVDCRRHDSTNSVRHYISL 35
           PV+L +    K+  +VD    D   + RH ISL
Sbjct: 541 PVLLHKMKNAKNSPRVDRINEDCILAARHLISL 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,343
Number of Sequences: 5004
Number of extensions: 25245
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)