Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e12r
(315 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 27 2.4
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89) 27 2.4
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 27 4.2
SB_45513| Best HMM Match : COXG (HMM E-Value=1.3) 27 4.2
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 27 4.2
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 26 5.6
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 26 5.6
SB_34017| Best HMM Match : Pepsin-I3 (HMM E-Value=4.1) 26 5.6
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 26 5.6
SB_53361| Best HMM Match : DUF333 (HMM E-Value=1.4) 26 7.4
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 26 7.4
>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
Length = 1222
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 164 PDALKPSRGATIGIKN-PPMQRTAPPTMLTIRAVKNP 271
P +KP + + G+K+ PP++++ PP + K P
Sbjct: 186 PSIIKPVKTSWFGVKSGPPLRQSTPPFYTKLFGTKPP 222
>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
Length = 1328
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 140 AAMLPAIIPD-ALKPSRGATIGIKNPPMQRTAPPT 241
+A++ I+ D A P R ++ G + PP++RT PT
Sbjct: 93 SALVNIIMQDGAAPPPRPSSAGAELPPLERTGSPT 127
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 157 HYSRCAEAEQRCHDWDQKPSHAKNGSA 237
H S+ AEAE+ C D KP+ A+ A
Sbjct: 587 HVSKPAEAEKSCADHLSKPAEAEKSRA 613
>SB_45513| Best HMM Match : COXG (HMM E-Value=1.3)
Length = 296
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 106 RKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIH 2
R HY K C ++DS V Y+ ++T+ IH
Sbjct: 30 RLHYEKDPCVKYDSNRKVWIYLHRNRTEEEFEKIH 64
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 115 FNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 5
+ G +HY K C R + + YI + K + C+S+
Sbjct: 136 YKGIEHYHKYTCLRFVKRTTEKDYIRVMKPQSGCNSM 172
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 157 HYSRCAEAEQRCHDWDQKPSHAK 225
+ S C E EQ C D K +H K
Sbjct: 2222 YISSCVETEQSCDDLGPKKTHVK 2244
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 125 YDWAE-AAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKN 268
Y WA A P ++ A KP+ AT + PP P + +V++
Sbjct: 911 YSWANPTATKPKVLTSASKPTSYATKTVPPPPKPTQHPTKSVPASSVRS 959
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 108 PLNSRNTTGLKLQCFPPLFPMR*SRAEVPRLGSKTLPCK 224
P+ ++++ PP F + EVP+ GS TL CK
Sbjct: 621 PVGTKSSEAFLKIFVPPSFDVLPKDLEVPQGGSPTLQCK 659
>SB_34017| Best HMM Match : Pepsin-I3 (HMM E-Value=4.1)
Length = 153
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 139 SCNASRHYSRCAEAEQRCHDWDQKPSHAKNGSAYDVNY 252
+C + Y+R ++ + +D+ Q K G A D+NY
Sbjct: 66 TCTRTSQYTRESKPNKIFNDFSQTSKPKKAGIAMDINY 103
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 303 LVRSYCDLRIMGFFTALIVNIVGGAVLCMGGFLIPIV 193
LVR D ++ + ALIV+++GG L + + P++
Sbjct: 757 LVRLVSDCLVVSWVIALIVSVIGGVFLLLVVYEEPLM 793
>SB_53361| Best HMM Match : DUF333 (HMM E-Value=1.4)
Length = 277
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 211 VFDPNRGTSARLQRIGNNG 155
V +P +GT ARL++ G NG
Sbjct: 142 VANPEKGTQARLRKRGQNG 160
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 25 LFLTNLCNVLRSWCYHGG 78
L +TNLC +L S+ HGG
Sbjct: 332 LVITNLCCMLESFLIHGG 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,229,517
Number of Sequences: 59808
Number of extensions: 200112
Number of successful extensions: 448
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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