Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e12r
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    28   1.6  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   2.8  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    27   2.8  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    27   2.8  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   2.8  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    26   6.6  
U97196-6|AAB52455.1|  373|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -3

Query: 154  GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 5
            G+HC    +   +   R+H+I+ +CR  D               NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -3

Query: 154  GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 5
            G+HC    +   +   R+H+I+ +CR  D               NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 148 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCS 11
           +CS +P V  E      + K     H S N+  ++     +DNCC+
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCT 815


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 86  NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 226
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 86  NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 226
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 211 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 89
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 211 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 89
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 148 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCS 11
           +CS +P V  E      + K     H S N+  ++     +DNCC+
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCT 815


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 158 IIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 289
           + PD+LK  R   + +KNP  Q+      + +R + +P  LK+Q
Sbjct: 858 LTPDSLKSLRLIGMTLKNPDSQK----INILVRLISSPEYLKNQ 897


>U97196-6|AAB52455.1|  373|Caenorhabditis elegans Hypothetical
           protein B0207.7 protein.
          Length = 373

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 166 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRH 47
           G+N G H S   ++L +    + Y+++D     STN++RH
Sbjct: 147 GSNCGWHASSRRILLFDLGFSRKYLELD----PSTNTMRH 182


>AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical
           protein F31F4.7 protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 288 CDLRIMGFFTALIVNIVGGAVLCMGGFLIPIVAPLL 181
           C+LR MGF T  ++++    V+C+  F++ ++  L+
Sbjct: 479 CNLRTMGFATYHLLDV----VVCLTSFVVLVILSLV 510


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,513,036
Number of Sequences: 27780
Number of extensions: 145008
Number of successful extensions: 298
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)