Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e12f
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 27 3.7
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89) 27 3.7
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 27 6.4
SB_45513| Best HMM Match : COXG (HMM E-Value=1.3) 27 6.4
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 27 6.4
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 26 8.5
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 26 8.5
SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_34017| Best HMM Match : Pepsin-I3 (HMM E-Value=4.1) 26 8.5
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 26 8.5
>SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 198 EFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNC-CSSIHSGFKMS 332
E + KHYI V R + +HYI + K + CS I S K+S
Sbjct: 83 ECSRSKHYIIVPKNRSTECSRSKHYIIVPKNRSTECSKIKSVLKIS 128
>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
Length = 1222
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 152 PDALKPSRGATIGIKN-PPMQRTAPPTMLTIRAVKNP 45
P +KP + + G+K+ PP++++ PP + K P
Sbjct: 186 PSIIKPVKTSWFGVKSGPPLRQSTPPFYTKLFGTKPP 222
>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
Length = 1328
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 176 AAMLPAIIPD-ALKPSRGATIGIKNPPMQRTAPPT 75
+A++ I+ D A P R ++ G + PP++RT PT
Sbjct: 93 SALVNIIMQDGAAPPPRPSSAGAELPPLERTGSPT 127
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 159 HYSRCAEAEQRCHDWDQKPSHAKNGSA 79
H S+ AEAE+ C D KP+ A+ A
Sbjct: 587 HVSKPAEAEKSCADHLSKPAEAEKSRA 613
>SB_45513| Best HMM Match : COXG (HMM E-Value=1.3)
Length = 296
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 210 RKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIH 314
R HY K C ++DS V Y+ ++T+ IH
Sbjct: 30 RLHYEKDPCVKYDSNRKVWIYLHRNRTEEEFEKIH 64
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 201 FNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 311
+ G +HY K C R + + YI + K + C+S+
Sbjct: 136 YKGIEHYHKYTCLRFVKRTTEKDYIRVMKPQSGCNSM 172
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 159 HYSRCAEAEQRCHDWDQKPSHAK 91
+ S C E EQ C D K +H K
Sbjct: 2222 YISSCVETEQSCDDLGPKKTHVK 2244
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 191 YDWAE-AAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKN 48
Y WA A P ++ A KP+ AT + PP P + +V++
Sbjct: 911 YSWANPTATKPKVLTSASKPTSYATKTVPPPPKPTQHPTKSVPASSVRS 959
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 208 PLNSRNTTGLKLQCFPPLFPMR*SRAEVPRLGSKTLPCK 92
P+ ++++ PP F + EVP+ GS TL CK
Sbjct: 621 PVGTKSSEAFLKIFVPPSFDVLPKDLEVPQGGSPTLQCK 659
>SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 216 HYIKVDCRRHDSTNSVRHYISLS-KTDNCCSSIHSG 320
HY + H TN++ I+++ T NCC H G
Sbjct: 45 HYYHIYDYHHQHTNAIIIIITITGTTTNCCYRHHDG 80
>SB_34017| Best HMM Match : Pepsin-I3 (HMM E-Value=4.1)
Length = 153
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 177 SCNASRHYSRCAEAEQRCHDWDQKPSHAKNGSAYDVNY 64
+C + Y+R ++ + +D+ Q K G A D+NY
Sbjct: 66 TCTRTSQYTRESKPNKIFNDFSQTSKPKKAGIAMDINY 103
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 13 LVRSYCDLRIMGFFTALIVNIVGGAVLCMGGFLIPIV 123
LVR D ++ + ALIV+++GG L + + P++
Sbjct: 757 LVRLVSDCLVVSWVIALIVSVIGGVFLLLVVYEEPLM 793
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,118,761
Number of Sequences: 59808
Number of extensions: 241609
Number of successful extensions: 494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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