Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e12f
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 28 2.4
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 28 2.4
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 27 3.2
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 27 3.2
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 4.3
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 27 4.3
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 27 4.3
AC087079-1|AAK27872.1| 402|Caenorhabditis elegans Hypothetical ... 27 5.7
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 26 9.9
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +3
Query: 162 GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 311
G+HC + + R+H+I+ +CR D NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +3
Query: 162 GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 311
G+HC + + R+H+I+ +CR D NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 168 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHS 317
+CS +P V E + K H S N+ ++ +DNCC+ ++
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 168 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHS 317
+CS +P V E + K H S N+ ++ +DNCC+ ++
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -2
Query: 230 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 90
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -2
Query: 230 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 90
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 105 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 227
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 105 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 227
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
>AC087079-1|AAK27872.1| 402|Caenorhabditis elegans Hypothetical
protein Y37E3.1 protein.
Length = 402
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 280 CQKQITAARQYILDLKCLKFRNKYDE 357
C+ T + YI CLKF KYDE
Sbjct: 209 CELSRTDPQVYINMATCLKFMEKYDE 234
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 158 IIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 27
+ PD+LK R + +KNP Q+ + +R + +P LK+Q
Sbjct: 858 LTPDSLKSLRLIGMTLKNPDSQK----INILVRLISSPEYLKNQ 897
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,985
Number of Sequences: 27780
Number of extensions: 182157
Number of successful extensions: 378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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