Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e12f
         (372 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    28   2.3  
At5g38630.1 68418.m04672 cytochrome B561 family protein contains...    27   4.0  
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor...    26   7.0  
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr...    26   7.0  
At1g03170.1 68414.m00294 expressed protein                             26   7.0  
At3g60520.1 68416.m06769 expressed protein                             26   9.2  
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10...    26   9.2  
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    26   9.2  
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    26   9.2  

>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 164 PAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 27
           PA  P   KP    T  ++NPP ++    T    R+V+NP   K Q
Sbjct: 61  PAATPPREKPQHRTTRSVENPPREKPQEKT----RSVENPPREKPQ 102


>At5g38630.1 68418.m04672 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 230

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 58  ALIVNIVGGAVLCMGGFLI-PIVAPLLG 138
           A++VN +G  +L +GGF+I  +V P+ G
Sbjct: 196 AMLVNTMGVLILILGGFVILGVVTPVSG 223


>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
           chloroplast (NDPK2) identical to SP|O64903 Nucleoside
           diphosphate kinase II, chloroplast precursor (NDK II)
           (NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
           thaliana]; contains Pfam PF00334 : Nucleoside
           diphosphate kinase domain; contains Pfam profile
           PF00334: Nucleoside diphosphate kinase
          Length = 231

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 25  YCDLRIMGFFTALIVNIVGGAVLCMGGFLIPIVA 126
           Y DL    FF  LI  I  G V+CM    + +VA
Sbjct: 131 YKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVA 164


>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 928

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 155 IPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKN 48
           IPD  K      + +++  +    PPT+LT+ ++KN
Sbjct: 246 IPDLSKSENLFDLQLRDNDLTGIVPPTLLTLASLKN 281


>At1g03170.1 68414.m00294 expressed protein
          Length = 240

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 179 EAAMLPAIIPDALKPSRGATIGIKNPPMQR--TAPPTMLTIRAVK-NPMI 39
           EA   P   P  LKP     +  K PPM R  + PP +  +   K N M+
Sbjct: 86  EATTTPRAPPRQLKPQEDTNLPDKTPPMSRNNSFPPPIKFVEDSKYNRMV 135


>At3g60520.1 68416.m06769 expressed protein
          Length = 129

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 165 SRHYSRCAEAEQRCHDWDQKPSHAKNGSAYDVNY*GSEKSHDP*VTVTSHQI 10
           S +Y   A+  + C DW Q  + ++ G+ + VN   S++S+    +   HQI
Sbjct: 37  SSYYKEQADPIKIC-DWCQCEAKSRTGAKHGVNGGSSKRSYRSEYSSPHHQI 87


>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 294 YLFLTNLCNVLRSWCYHGGGSQL*YNASG 208
           ++F T L   +++W Y   GS++ Y+A G
Sbjct: 512 FIFSTALDGKIKAWLYDNVGSRVDYDAPG 540


>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 294 YLFLTNLCNVLRSWCYHGGGSQL*YNASG 208
           ++F T L   +++W Y   GS++ Y+A G
Sbjct: 522 FIFSTALDGKIKAWLYDNMGSRVDYDAPG 550


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 294 YLFLTNLCNVLRSWCYHGGGSQL*YNASG 208
           ++F T L   +++W Y   GS++ Y+A G
Sbjct: 522 FIFSTALDGKIKAWLYDNMGSRVDYDAPG 550


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,648,967
Number of Sequences: 28952
Number of extensions: 173840
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)