Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e09r
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    30   0.31 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    28   1.7  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    27   2.9  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    27   2.9  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   3.8  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -2

Query: 460 YFRSKRRNYSYRSDDSYRTDLESKLEDGFHEYCHPLNALTR 338
           +F++  R Y +   D + +D E ++   F+ + +P+ +LTR
Sbjct: 360 FFQNSAREYMFSLTDFFYSDFELRVSYDFYGHDYPIKSLTR 400


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 98  HCDLLFVFIQKRSIIKKNTIRFPNKYANTSQISRIFFYDGQTSITTVL 241
           H DLLF  +QK S I    + + N  A  S +   FF    T + T L
Sbjct: 314 HPDLLFFDVQKISWITLAHVVYSNARAQNSFVDSTFFDIKNTDVLTCL 361


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -2

Query: 247 DYKDSGN*CLAIIEKYSGYL*CISIFIRKSYCVFFYY*TFLNKNKKQITMFLDFMFITDA 68
           DYKDS N    + E    Y   +  F+  SYC      +FL  N K+  +  +  F+  +
Sbjct: 65  DYKDSPNQEPKLFEL--SYA-ALPRFLYLSYCGKLKKMSFLLGNTKEFAIPNNGYFVESS 121

Query: 67  RLSLMYQ 47
           R S++YQ
Sbjct: 122 RASILYQ 128


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 134 SIIKKNTI-RFPNKYANTSQISRIFFYDG 217
           SII++ TI   PN+Y+N+  I+R    DG
Sbjct: 206 SIIRRETIGTSPNQYSNSETITRFQIMDG 234


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 635 NQLGFQRYGSCRFIPRILQVYGREM*AVGPVYINCSLAGQGDQTSA 498
           N  G + YG C F+   L+V    +     + INC  A +G    A
Sbjct: 198 NAFGARSYGECEFVSSFLKVVIVIIFFFVAIIINCGAAPKGGYIGA 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,643
Number of Sequences: 5004
Number of extensions: 58458
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)