Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e09r
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    31   0.99 
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623...    29   3.0  
12_01_0495 - 3935395-3937110                                           29   5.3  
01_01_0508 + 3710435-3710980,3711086-3711238,3711323-3711408,371...    28   7.0  
09_02_0312 - 7168332-7168408,7168492-7168621,7168793-7168861,716...    28   9.2  

>02_02_0009 +
           6068260-6068591,6068797-6068917,6069034-6069122,
           6069207-6069291,6069421-6069580,6069667-6069743,
           6069848-6069898,6069979-6070069,6070167-6070468,
           6070549-6070830,6070911-6071388,6071457-6071560,
           6071647-6071809,6071895-6072017,6072099-6072217,
           6072304-6072636,6072713-6073003,6073088-6073171,
           6073260-6073393,6073478-6073705,6073795-6073966,
           6074062-6074316,6074408-6074668
          Length = 1444

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 320 VSYTELTSECVQRVTILMK-TIFQFRFEVCSVTVIGTVGVIASLASEV 460
           +S  ELT  C  R  +LMK   F + F++  + ++G++G+   L +++
Sbjct: 500 ISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKM 547


>08_01_0705 +
           6231220-6231390,6231900-6231954,6232043-6232194,
           6232252-6232335,6232614-6232797,6232885-6232988,
           6233109-6233183,6233366-6233405,6233495-6233577,
           6233687-6233764,6233868-6234011,6234093-6234160,
           6234831-6234945,6235045-6235201,6235311-6235408
          Length = 535

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 517 KVIRRLPDYHKEGKNAAWDYFRSKRRNYSYRSDDS 413
           +++ RL DY +EG  A WD    + R++  R  +S
Sbjct: 24  ELVERLKDYGQEGAFALWDELAPEERDFLVRDIES 58


>12_01_0495 - 3935395-3937110
          Length = 571

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -2

Query: 502 LPDYHKEGKNAAWDYFRSKRRNYSYRSDDSYRTDLESKLEDGFHEYCHPLNALTREFGI* 323
           L  YH +G  A       +     Y S D++  D E+  E G+H+  H   A   E G  
Sbjct: 323 LGHYHHDGHLAQAAAAPEQDHYLGYHSHDAHVVDAEATPEQGYHDDAHVAVAPAPEQG-- 380

Query: 322 DDLG 311
            DLG
Sbjct: 381 -DLG 383


>01_01_0508 +
           3710435-3710980,3711086-3711238,3711323-3711408,
           3711533-3711617,3711705-3711824,3711906-3711974,
           3712088-3712217,3712336-3712406
          Length = 419

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 311 SQIVSYTELTSECVQRVTILMKTIFQFRFEVCSVTVIGT 427
           +++   T   + CV+RV +++ ++  FR  +  V  +GT
Sbjct: 360 ARVSPVTHSVANCVKRVVVIVASVLFFRTPISPVNALGT 398


>09_02_0312 -
           7168332-7168408,7168492-7168621,7168793-7168861,
           7168947-7169066,7169356-7169440,7169565-7169650,
           7169762-7169914,7170008-7170130,7170974-7171357
          Length = 408

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 263 CFRIIFLIVYLFS*CHSQIVSYTELTSECVQRVTILMKTIFQFRFEVCSVTVIGTVGVIA 442
           CF     + Y+     +++   T     CV+RV +++ ++  FR  V  +  +GT   +A
Sbjct: 334 CFHAYQQVSYMIL---ARVSPVTHSVGNCVKRVVVIVTSVLFFRTPVSPINSLGTGVALA 390

Query: 443 SL 448
            +
Sbjct: 391 GV 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,583,947
Number of Sequences: 37544
Number of extensions: 328084
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)