Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e09r
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_50210| Best HMM Match : I-set (HMM E-Value=0.11)                    31   0.76 
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  31   0.76 
SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  

>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1336

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 116 VFIQKRSIIKKNTIR---FPNKYANTSQISRIFFYDGQTSITTVLVVKKSVGCF 268
           VF+ +   ++ NT R   F N   +T  I R FF  GQ++  T LVV+ + G F
Sbjct: 506 VFLSRAVYVQTNTCRQSTFQNNTGSTRHI-RCFFSPGQSTSRTTLVVRHTSGVF 558


>SB_50210| Best HMM Match : I-set (HMM E-Value=0.11)
          Length = 348

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
 Frame = +2

Query: 140 IKKNTIRFPNKYANTSQISRIFFYDGQTSITTVLVVK-KSVGCFRIIFLIVYLFS*CHSQ 316
           ++  ++++     N SQ+ R+ +   Q+SI +V  +  K   C R +  ++ +++ C S 
Sbjct: 29  VRAMSVKYCECTRNVSQVLRV-YAQCQSSIASVPAMSVKYCECARNVSQVLQVYAQCQSS 87

Query: 317 IVSYTELT---SECVQRVTILMKTIFQFRFEVCSV 412
           I S   ++    EC + V+ +++   Q +  + SV
Sbjct: 88  IASVPAMSVKYCECTRNVSQVLRVCAQCQSSIASV 122


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
 Frame = +2

Query: 140  IKKNTIRFPNKYANTSQISRIFFYDGQTSITTVLVVK-KSVGCFRIIFLIVYLFS*CHSQ 316
            ++  ++++     N SQ+ R+ +   Q+SI +V  +  K   C R +  ++ +++ C S 
Sbjct: 1575 VRAMSVKYCECTRNVSQVLRV-YAQCQSSIASVPAMSVKYCECARNVSQVLQVYAQCQSS 1633

Query: 317  IVSYTELT---SECVQRVTILMKTIFQFRFEVCSV 412
            I S   ++    EC + V+ +++   Q +  + SV
Sbjct: 1634 IASVPAMSVKYCECTRNVSQVLRVCAQCQSSIASV 1668


>SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = -2

Query: 535 IVPWLVKVIRRLPDYHKEGKNAAWDYFRSKRRNYSYRSDDSYRTDLESKLEDGFHEYCHP 356
           I  W ++   R  +  K+ K+    Y R + + Y+++ DD  R     +       + H 
Sbjct: 564 IFDWCMRTWHRFSELSKQ-KDVTGVYMRQRIKLYTHKIDDDLRVKEHMQAHQHLPGFRHS 622

Query: 355 LNALTREFGI*DD 317
           L  +T ++GI  D
Sbjct: 623 LQIIT-DYGINGD 634


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,246,427
Number of Sequences: 59808
Number of extensions: 415443
Number of successful extensions: 1011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)