Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e09r
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine re...    31   1.2  
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    29   3.6  
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine r...    28   6.2  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine
           receptor, class z protein70 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -1

Query: 194 IFVMY*HIYSEILLCFFLLLNVFE*KQKAN 105
           ++V +  ++S +++C+ LLL +FE  +KAN
Sbjct: 20  VYVSFLFLFSVLMICYVLLLPIFEYTRKAN 49


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
            C05C10.2b protein.
          Length = 1553

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 140  IKKNTIRFPNKYANTSQISRIFFYDGQTSITTVLVVKKSVGC 265
            I +N I  P    N S I  I FY  QTSI T  +    V C
Sbjct: 1353 IVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSGVKC 1394


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
            C05C10.2a protein.
          Length = 1551

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 140  IKKNTIRFPNKYANTSQISRIFFYDGQTSITTVLVVKKSVGC 265
            I +N I  P    N S I  I FY  QTSI T  +    V C
Sbjct: 1353 IVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSGVKC 1394


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
 Frame = +2

Query: 119 FIQKRSIIKKNTIRFPNKYANTSQISRIFFYDGQTSITTVLVVK-KSVGCFRIIFLIVYL 295
           FI ++S I    I F N  ++  Q+  + FY   + I     +    VG   + F  ++L
Sbjct: 34  FISRKSSIY--VIAFFNIISDLLQLFYLCFYFSLSIIIDQYAIAGDKVGRLSVFFGFIFL 91

Query: 296 FS*CHSQIVSYTELTSECVQRVTILMKTIFQFRFEVCSVTVIGTVGVI-ASLASEVIPCC 472
                  ++  T   +  +  +T     IF F   +  +TV+ +  +  A+ A  + PCC
Sbjct: 92  SGWFMENLLQPTMAINRFLV-ITFNNHNIFTFNKTMLMMTVLISAALFSAACAQYLFPCC 150

Query: 473 VF 478
           VF
Sbjct: 151 VF 152


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 531 TINIDRTDGLHFPSIYLQYSR 593
           +INIDR   L+FP  Y +Y R
Sbjct: 101 SINIDRLGALYFPIFYFKYHR 121


>AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein47 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 107 LLFVFIQKRSIIKKNTIRF-----PNKYANTSQISRIFFYDGQTSITTVLVVKKSVGC 265
           L+F+ + +  + K+ ++ F     P      S+IS + F+D    +T VL +    GC
Sbjct: 146 LIFISVSQIGLSKEKSLEFAKINYPEYAVQFSKISNLMFFDSNLWLTGVLFISGFGGC 203


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +2

Query: 233 TVLVVKKSVGCFRIIFLIVYLFS*CHSQIVSYTELTSECVQRVTILMKTIFQFRFEVCS 409
           T+ V+ + + C  II + V+  S C  +++ ++ +T E  +++  +MKT F+  FE+ +
Sbjct: 508 TIEVLTEYLDC--IITMGVFDIS-CADELMRHSSVTFESSEQLEKVMKTAFEENFEIAN 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,906
Number of Sequences: 27780
Number of extensions: 323047
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)