Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e09f
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   3.8  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   6.6  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    25   6.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 261 GQGPSCGRSQRRWRLPRWKVLLAGLLPQIPK 353
           G+GP CG     WR+  W   L G++P + +
Sbjct: 645 GKGPGCGFWAPSWRV--WLFFLRGIVPLLER 673


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 319 SFLLDFFLRYLKAPPSSRDSAAWLGQEDEPLTGF 420
           S +LD FLR L      ++SA WLG   E ++ +
Sbjct: 444 SSILDCFLRRLAQLGHYKESAEWLGMAIEKISTY 477


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -1

Query: 473 SDHRTIPVV*RS----QPARQMNPVSGSSSWPSHAALSRDEGGAFRYLRKKSSKKD 318
           SD  T+ ++ RS    Q  +Q+   +G S W  HA L     G+    +K SS  +
Sbjct: 180 SDSATMGIISRSAGLGQNTKQICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSE 235


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 191 TTSTPLASPRLLMTPPFNMAV 129
           +T TP+ SP+L    P+N A+
Sbjct: 37  STKTPINSPKLSSAGPYNQAI 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,421
Number of Sequences: 5004
Number of extensions: 42589
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)