Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e09f
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37041| Best HMM Match : GBP (HMM E-Value=0)                         97   8e-21
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)                   42   3e-04
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      37   0.011
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)                    37   0.011
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)                   28   6.9  

>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
          Length = 466

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 385 WLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRFND-QKVAVVLMDTQGTFDNSSTVR 561
           WLG E E L GF WR G +R TTGI++W++P + +  D ++V V+LMDTQG FD+SSTV+
Sbjct: 6   WLGGETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTVK 65

Query: 562 DSSTIFALSTLLSSIQI 612
           D +TIFALST+ SS Q+
Sbjct: 66  DCATIFALSTMTSSTQL 82


>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
          Length = 368

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
 Frame = +1

Query: 445 QTTGIVLWSEPIVTRFND-QKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQI 612
           +T GI +W +P+  +  D Q+VA+V +DT+G    + +    + +FA++TLLSS  I
Sbjct: 154 ETMGIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATLLSSYLI 210


>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query: 439 DRQTTGIVLWSEPIVTRFND---QKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQ 609
           D +T GI  W   +  +F D   ++V VVL+D++G     +   D  ++F LS LLSS+ 
Sbjct: 84  DPETMGI--WLYVVDQKFKDANGREVTVVLLDSEGINATGAQKSDDHSVFTLSVLLSSVM 141

Query: 610 I 612
           I
Sbjct: 142 I 142


>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
          Length = 621

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query: 439 DRQTTGIVLWSEPIVTRFNDQK---VAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQ 609
           D +T G+ LW  P   +F D K     VVL+D++GT  + S  ++   I  L+ LLSS+ 
Sbjct: 182 DPKTMGLWLWVVP--KQFRDDKGQPFTVVLVDSEGTKASQSQQKEDDVIVTLTLLLSSVL 239

Query: 610 I 612
           I
Sbjct: 240 I 240


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 353 KRPPRLVIVLRGWARKTSR*RDSFGGLVATVRQLVSFYGRNRL 481
           KR P+L++  + W +       SF   V TVR+  + Y R++L
Sbjct: 104 KRDPQLMLREKFWCQLQREPNQSFDSWVVTVRERAAEYDRSKL 146


>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 1562

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 428 RQMNPVSGSSSWPSHAALSRDEGGAF 351
           R ++ + G+  +PSH  L  DEGG +
Sbjct: 376 RNVHVIRGADEYPSHLNLFSDEGGTY 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,186,811
Number of Sequences: 59808
Number of extensions: 335406
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)