Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e09f
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative guan... 135 2e-32
AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical ... 135 2e-32
AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical ... 135 2e-32
Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical pr... 113 1e-25
AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical... 27 8.1
AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein. 27 8.1
>AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative
guanylate-binding protein protein.
Length = 573
Score = 135 bits (327), Expect = 2e-32
Identities = 74/159 (46%), Positives = 103/159 (64%), Gaps = 11/159 (6%)
Frame = +1
Query: 169 EAKGVEVVKVTDD--HTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFL 342
E + V VV+V +D H+++LN + L ILL +V D YR GKSFLL+FFL
Sbjct: 29 EPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFL 88
Query: 343 RYL----KAPPS----SRDSAAWLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRF-N 495
RYL KA D++ W+ + PL+GF WR G +R T GI++WSEP + + N
Sbjct: 89 RYLTWRSKADKVMGEVELDNSQWMSP-NSPLSGFSWRGGSERDTNGILIWSEPFIMKDKN 147
Query: 496 DQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQI 612
+++AV+LMDTQG FD+ STV+D +TIFALST++SS+QI
Sbjct: 148 GEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQI 186
>AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical
protein Y54G2A.2b protein.
Length = 535
Score = 135 bits (327), Expect = 2e-32
Identities = 74/159 (46%), Positives = 103/159 (64%), Gaps = 11/159 (6%)
Frame = +1
Query: 169 EAKGVEVVKVTDD--HTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFL 342
E + V VV+V +D H+++LN + L ILL +V D YR GKSFLL+FFL
Sbjct: 29 EPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFL 88
Query: 343 RYL----KAPPS----SRDSAAWLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRF-N 495
RYL KA D++ W+ + PL+GF WR G +R T GI++WSEP + + N
Sbjct: 89 RYLTWRSKADKVMGEVELDNSQWMSP-NSPLSGFSWRGGSERDTNGILIWSEPFIMKDKN 147
Query: 496 DQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQI 612
+++AV+LMDTQG FD+ STV+D +TIFALST++SS+QI
Sbjct: 148 GEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQI 186
>AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical
protein Y54G2A.2a protein.
Length = 573
Score = 135 bits (327), Expect = 2e-32
Identities = 74/159 (46%), Positives = 103/159 (64%), Gaps = 11/159 (6%)
Frame = +1
Query: 169 EAKGVEVVKVTDD--HTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFL 342
E + V VV+V +D H+++LN + L ILL +V D YR GKSFLL+FFL
Sbjct: 29 EPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFL 88
Query: 343 RYL----KAPPS----SRDSAAWLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRF-N 495
RYL KA D++ W+ + PL+GF WR G +R T GI++WSEP + + N
Sbjct: 89 RYLTWRSKADKVMGEVELDNSQWMSP-NSPLSGFSWRGGSERDTNGILIWSEPFIMKDKN 147
Query: 496 DQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQI 612
+++AV+LMDTQG FD+ STV+D +TIFALST++SS+QI
Sbjct: 148 GEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQI 186
>Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical
protein Y41E3.3 protein.
Length = 520
Score = 113 bits (271), Expect = 1e-25
Identities = 65/142 (45%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Frame = +1
Query: 199 TDDHTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFLRYLKAPPSSRDS 378
T ++LNE AL +L + +R GKSFLL+FFL YL + S+ S
Sbjct: 38 TQPGKFRLNESALNSVLGHSACANKKIVIISVAGAFRKGKSFLLNFFLEYLYSLHKSQQS 97
Query: 379 AA---WLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPI-VTRFNDQKVAVVLMDTQGTFDN 546
+ WL +D L GF WRAG R T GI LW EPI + + AVVLMDTQGTFDN
Sbjct: 98 DSSLEWL-TDDCQLHGFHWRAGVKRDTVGIWLWGEPIMIESVTGEMFAVVLMDTQGTFDN 156
Query: 547 SSTVRDSSTIFALSTLLSSIQI 612
+ST + T+FALST++SS+QI
Sbjct: 157 NSTYQQCMTVFALSTIVSSVQI 178
>AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical
protein Y47D3A.23a protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 466 WSEPIVTRFNDQKVAVVLMDTQGTFDNS 549
W EPIV R +D++ A+V DN+
Sbjct: 236 WLEPIVQRISDERTAIVCPMIDSISDNT 263
>AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 466 WSEPIVTRFNDQKVAVVLMDTQGTFDNS 549
W EPIV R +D++ A+V DN+
Sbjct: 236 WLEPIVQRISDERTAIVCPMIDSISDNT 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,025
Number of Sequences: 27780
Number of extensions: 241728
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -