Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e09f
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38840.1 68415.m04772 guanylate-binding family protein simila...    40   0.001
At4g11020.1 68417.m01792 expressed protein                             31   0.80 
At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho...    29   1.9  
At4g23870.1 68417.m03432 expressed protein predicted proteins, A...    28   4.3  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    27   9.9  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    27   9.9  
At1g44920.1 68414.m05147 expressed protein                             27   9.9  

>At2g38840.1 68415.m04772 guanylate-binding family protein similar
           to SP|Q01514 Interferon-induced guanylate-binding
           protein 1 (Guanine nucleotide-binding protein 1)
           (Interferon-gamma inducible protein MAG-1) {Mus
           musculus}; contains Pfam profile PF02263:
           Guanylate-binding protein, N-terminal domain
          Length = 679

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
 Frame = +1

Query: 439 DRQTTGIVLWSEPIVTRFNDQKVAVVLMDTQGTFDN--SSTVRDSSTIFALSTLLSSIQI 612
           D +T GI +W  P+    +  K +V+ +DT+G F++   S V D   IFAL+T++SS+ I
Sbjct: 96  DTKTKGIWVWGTPLELEIDGVKTSVIYLDTEG-FESVGKSNVYD-DRIFALATVMSSVLI 153


>At4g11020.1 68417.m01792 expressed protein 
          Length = 159

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
 Frame = +1

Query: 214 YQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDF--FLRYLKAPPSSRDSAAW 387
           Y+  +  L+++L RDE++ +           +GG + L  F  FLR L+A   + ++AA 
Sbjct: 29  YKRKDRKLKIVLRRDELEKIILFQLNADGANKGGDAKLASFGVFLRELEAERLAGEAAAA 88

Query: 388 LGQEDEPLTGFI--WRAGCDRQTTGIVLWSEPIVTRFNDQ 501
           + +E++        W+   +     ++ W E IV    D+
Sbjct: 89  VAKEEKSSRRLCRRWKPSLE----SVIEWPEEIVVNEIDE 124


>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
           homolog-1 (IRE1-1) identical to Ire1 homolog-1
           [Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
           GI:15277136;
          Length = 881

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 285 YDHRKVLDLISQ*DHP*CILIQLIRVVVGHLHHLHPFG 172
           +++ K ++L  +  HP  +L++L+R +V  L HLH  G
Sbjct: 566 FENGKGVELWKENGHPSPVLLKLMRDIVAGLVHLHDIG 603


>At4g23870.1 68417.m03432 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 116

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +1

Query: 214 YQLNEDALRMILLRDEVKDLPXXXXXXXXXYRG-GKSFLLDF--FLRYLKAPPSSRDSAA 384
           Y+  +  ++++L RDE++ L            G G++ L  F  FLR L+A  S+ ++AA
Sbjct: 25  YKRKDRKVKIVLRRDELEKLILFQLNANGNVDGKGETTLASFGDFLRELEAERSAGEAAA 84

Query: 385 WLGQEDE 405
              +E+E
Sbjct: 85  KAAEEEE 91


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 261 GQGPSCGRSQRRWRLPRWKVLLAGLLPQIPK 353
           G+GP CG     WR+  W   L G++P + +
Sbjct: 620 GKGPGCGFWAPMWRV--WLFFLRGIVPLLER 648


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 261 GQGPSCGRSQRRWRLPRWKVLLAGLLPQIPK 353
           G+GP CG     WR+  W   L G++P + +
Sbjct: 668 GKGPGCGFWAPMWRV--WLFFLRGIVPLLER 696


>At1g44920.1 68414.m05147 expressed protein
          Length = 258

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 361 PSSRDSAAWLGQEDEPLTGFI-WRAGCDRQTTGIVLWSEPIVTRFNDQKVAVVLMDTQGT 537
           PSS D   ++GQ++ PL G I +       ++ I  W    +    D  +A+++    G 
Sbjct: 70  PSSGDETVFVGQDNVPLEGVIQFDKPSSTSSSNITKWGRVALLAGGD-VLALLIFSAIGR 128

Query: 538 FDNSSTVRDSSTI 576
           F +   V    T+
Sbjct: 129 FSHGFPVFSLDTL 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,066
Number of Sequences: 28952
Number of extensions: 230944
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)