Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e07f
         (349 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   1.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   1.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   2.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   3.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   6.3  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    20   6.3  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    20   6.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    20   6.3  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    20   6.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   6.3  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 3   FSVNFCIGEVYQNGQTYQKGWN--YWQ 77
           F+ N+   + Y N   YQ+G++  Y+Q
Sbjct: 211 FNFNYQYNQAYSNYNNYQEGFSCQYYQ 237


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 3   FSVNFCIGEVYQNGQTYQKGWN--YWQ 77
           F+ N+   + Y N   YQ+G++  Y+Q
Sbjct: 231 FNFNYQYNQAYSNYNNYQEGFSCQYYQ 257


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 76  KYGTR-YGASLRKMVKKMEVTQHAKYTCSFCGK 171
           KY  R +  S   ++ +   T    Y+C  CGK
Sbjct: 83  KYCNRQFTKSYNLLIHERTHTDERPYSCDICGK 115


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 58  FWYVWPFW*TSPIQKLTEK 2
           FW++W    TS ++K  +K
Sbjct: 411 FWFMWKAKGTSGLEKHVDK 429


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 107 VKWSKRWK*PNTQSI 151
           +KW K  K PNT+++
Sbjct: 286 MKWKKDNKLPNTKNV 300


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 7   LSTFVSERFTKMAKRTKKV 63
           LST ++ RFT++  RT+ +
Sbjct: 237 LSTALAYRFTQVTDRTQSM 255


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 7   LSTFVSERFTKMAKRTKKV 63
           LST ++ RFT++  RT+ +
Sbjct: 237 LSTALAYRFTQVTDRTQSM 255


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 174 ILTTK*ASILCVLGYFHLFDHFT*RGTVTCAIFASNSNL 58
           I T     +LC+  +F  F  FT      CA    N +L
Sbjct: 155 IFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHL 193



 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 FFNIFLCLLFKLLYFT 298
           FFN+ L  L  L YFT
Sbjct: 188 FFNMHLLFLLCLDYFT 203


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 7   LSTFVSERFTKMAKRTKKV 63
           LST ++ RFT++  RT+ +
Sbjct: 237 LSTALAYRFTQVTDRTQSM 255


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 107 VKWSKRWK*PNTQSI 151
           +KW K  K PNT+++
Sbjct: 286 MKWKKDNKLPNTKNV 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,134
Number of Sequences: 336
Number of extensions: 1968
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)