Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e06r
(396 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 8e-09
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48) 40 7e-04
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.2
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06) 27 7.3
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4) 26 9.6
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5) 26 9.6
>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 56.4 bits (130), Expect = 8e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = -1
Query: 354 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 241
M K ++KG+SAINEVVTREYT+NLHKR+HG+ R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806
Score = 44.4 bits (100), Expect = 3e-05
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = -1
Query: 279 LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 106
+H G F + K ++K +K+ + V TR K + NVP+
Sbjct: 750 IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809
Query: 105 XXXXXRNDDEDSAHKLFTLVTYVPVASIKG 16
RN+DEDS HKL+TLVT V V++ KG
Sbjct: 810 RLARKRNEDEDSPHKLYTLVTSVAVSTFKG 839
>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
Length = 776
Score = 39.9 bits (89), Expect = 7e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = -1
Query: 129 NVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIK 19
NVP+ RN+DEDS HKL+TLVT V V++ K
Sbjct: 2 NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFK 38
>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 927
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 134 TPLDQRNLFKRVSTRMSGVPICFSANF 214
TP D N R T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311
>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 330 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 211
K K INEV+T Y + L KR R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 232 SNQRNPKVR*KTDGNSGHSSRHSLKQIPLV*GSQKCSLPCPCEAFT 95
S ++ ++ D GH + ++Q PL K LPC FT
Sbjct: 349 SKKKKQGIQGSADAEQGHHEQSLVRQRPLFAPLPKLRLPCQYNPFT 394
>SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 26.6 bits (56), Expect = 7.3
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 366 LKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGV-GFKKRAPRAIKEIRKFAE--KQ 196
+ + + K K R+ NE + REY LHK L + F PR R + KQ
Sbjct: 91 IALVIEKDKSLRRKIEEENEQLKREYLQQLHKTLEALRTFDFNNPRDAIFKRNLVKMHKQ 150
Query: 195 MGTPDIRVDTRLN 157
+G +RV +N
Sbjct: 151 VGNYCLRVYGEMN 163
>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
Length = 438
Score = 26.6 bits (56), Expect = 7.3
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +2
Query: 149 RNLFKRVSTRMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLP 328
RNL KRV R P C + R + + L R CK +V S +T+ +
Sbjct: 214 RNLAKRVHERFGDAPGCEFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTNSSSKER 273
Query: 329 FLSPLGLAI 355
++ PL I
Sbjct: 274 WMGPLASCI 282
>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
Length = 235
Score = 26.2 bits (55), Expect = 9.6
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 188 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILS 367
VP C + +SL+AL PT C L S V S D+P S +GL++ LS
Sbjct: 46 VPTCSLID--LSLVALSVNLDVPT-----CSLFDLSLVALSMNLDVPTCSLIGLSLFALS 98
>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
Length = 909
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 348 KPKGERKGKSAINEVVTREYTVNLHK 271
KPKG+ +G NEV +++ TV + K
Sbjct: 299 KPKGQPQGSRPSNEVQSKDSTVMISK 324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,136
Number of Sequences: 59808
Number of extensions: 219976
Number of successful extensions: 376
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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