Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e05r
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated...    29   3.4  
U14525-1|AAA50786.1|  434|Caenorhabditis elegans avermectin-sens...    29   3.4  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   5.9  
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    28   7.9  

>U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -1

Query: 669 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 505
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 504 VTGRNLE 484
           V G  LE
Sbjct: 319 VFGALLE 325


>U14525-1|AAA50786.1|  434|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl beta protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -1

Query: 669 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 505
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 504 VTGRNLE 484
           V G  LE
Sbjct: 319 VFGALLE 325


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 615 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 505
           + +T   S + TF   LK+P   VHI+G + G    G
Sbjct: 10  LPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVG 46


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -1

Query: 648 SFSLSTYSTAVMAVTGVGSSIATFLKNLK--LPLNKVHIVGFNLGAHVAGVTGR-NLEGK 478
           +F  +TYST +   T +GS++ T + N +   PL    +   N    +  V+G   L  K
Sbjct: 333 AFQHNTYSTTISPTTPIGSTVITVVANSENNTPLTYSLLADTNT-VSIDEVSGNVVLRKK 391

Query: 477 VARITGLDPSARDWENNV 424
           + +   L+ +A D EN V
Sbjct: 392 LEKPETLNVTASDGENVV 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,018
Number of Sequences: 27780
Number of extensions: 350882
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)