Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e05f
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  71   5e-13
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      71   9e-13
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            62   3e-10
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)                 31   0.88 
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   2.7  
SB_3297| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)           29   3.6  

>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = +3

Query: 207 FNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFS--LSTYSTAVMAV 380
           F  +  +V+IIHG   +   +   +++D  L+    NVI VDW S +  L+ Y  A    
Sbjct: 19  FRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYHVAAGNT 78

Query: 381 TGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 524
             VG+ +A  +  ++      L +VH++G +LGAHVAG  G  L GKV RIT
Sbjct: 79  RVVGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 15/127 (11%)
 Frame = +3

Query: 207 FNNNWDIVVIIHGHSG-TATTTINPIV-------KDAFLRSGNYNVIVVDWSSFSLSTYS 362
           FN +   V+IIHG +G T  T+I   V       K+  L  G++NVI+VDW   +   ++
Sbjct: 101 FNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDWMRGAWFPFT 160

Query: 363 TAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGK---VARI 521
            AV     VG+  A  L+ L+      L  VH++GF+ GAHVAG  GR ++ +   + RI
Sbjct: 161 RAVANTRLVGAQTARLLQILEERSGRKLAYVHVIGFSFGAHVAGYVGRRMKKRGRMIDRI 220

Query: 522 TGLDPSA 542
           T LDP+A
Sbjct: 221 TALDPAA 227


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
 Frame = +3

Query: 282 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VH 446
           +KD  LR  + NVI+VDW   +   Y  AV     VG+ +A F+K  L L  ++     H
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFH 174

Query: 447 IVGFNLGAHVAGVTGRNLE--GK-VARITGLDPS 539
            +GF+LGAH++G  G+ L+  G+ + RITGLDP+
Sbjct: 175 SIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPA 208


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
 Frame = +3

Query: 282 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HI 449
           ++ A ++  + NVI  DWS  +   Y  A      VG+ I   +K L           ++
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYL 691

Query: 450 VGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN 557
           VGF+LGAH++G  GR +     K+ RITGLDP++  + N
Sbjct: 692 VGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVN 730


>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
          Length = 624

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 102 RFGSLNKYYYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTIN 275
           R+    K Y + ++ R  +   + HF  G++PA  ++NN D+   +  H  + T  IN
Sbjct: 548 RYSGCEKSYTHPSSLRKHL---KAHFKCGDNPAGIYDNNNDLETPVPPHRESKTARIN 602


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +3

Query: 198 AAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMA 377
           A+ ++      VI HG++ + +T+    ++ A L+  + NV++ DW   +   Y  A   
Sbjct: 95  ASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPGADGMYWQATAN 154

Query: 378 VTGVGS 395
              VG+
Sbjct: 155 TRLVGA 160


>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +3

Query: 447 IVGFNLGAHVAGVTG---RNLEG-KVARITG 527
           ++GF+LG HVAG  G   +N  G K+ RI+G
Sbjct: 21  VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 399 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
           + +FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 237 IHGHSGTATTTINPIVKDAFLRSGNYNVIV---VDWSSFSLSTYSTAVMAVTGVGSSIAT 407
           + G   T TTT N ++K A L++G+Y V +   VD+    + +YS   + VT     +  
Sbjct: 58  VTGPRNTITTTKNALIKAASLKAGDYFVRLSASVDYVQ-GMVSYSYGFVRVTAAKPRV-K 115

Query: 408 FLKN 419
           FL+N
Sbjct: 116 FLRN 119


>SB_3297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 296 KRVFNNRVDRRRSSATVTVYYYDNIPIIVKGRSRIVSSGKVVFGECNWVSLC 141
           K + N     RR S     Y+  + P  V  RS  +    +V   C+WV+LC
Sbjct: 78  KTIINQYPAARRYSVITRYYFGVSRPFSVINRSSSIVPKGLVLILCSWVTLC 129


>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
          Length = 183

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
           FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 1   FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,919,715
Number of Sequences: 59808
Number of extensions: 375331
Number of successful extensions: 1028
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)