Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e05f
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64859-10|AAC69091.2| 383|Caenorhabditis elegans Hypothetical p... 33 0.14
U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated... 29 2.3
U14525-1|AAA50786.1| 434|Caenorhabditis elegans avermectin-sens... 29 2.3
Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 28 4.1
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 28 5.4
M98552-7|AAK82925.2| 355|Caenorhabditis elegans Hypothetical pr... 28 5.4
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 27 7.2
AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core alpha-6-... 27 7.2
AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical ... 27 7.2
AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl trans... 27 7.2
U49830-2|AAV58878.1| 324|Caenorhabditis elegans Hypothetical pr... 27 9.5
U49830-1|AAK31483.1| 458|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U64859-10|AAC69091.2| 383|Caenorhabditis elegans Hypothetical
protein R09F10.1 protein.
Length = 383
Score = 33.1 bits (72), Expect = 0.14
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +3
Query: 120 KYYYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFL 299
K Y YS + + L E+ D +NN + + G G T +N +
Sbjct: 251 KEYPYSALKHDQCFLKENDTRVFIDDFRMLSNNEEDIANWVGTKGPVTFGMNVVKAMYSY 310
Query: 300 RSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN 419
RSG +N V D + S+ ++ ++ G G S +KN
Sbjct: 311 RSGIFNPSVEDCTEKSMGAHALTIIGYGGEGESAYWIVKN 350
>U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 2 protein.
Length = 434
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 318 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 482
+++V W SF + +STA GV + + T ++ N KL P++ V +V LGA
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318
Query: 483 VTGRNLE 503
V G LE
Sbjct: 319 VFGALLE 325
>U14525-1|AAA50786.1| 434|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl beta protein.
Length = 434
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 318 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 482
+++V W SF + +STA GV + + T ++ N KL P++ V +V LGA
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318
Query: 483 VTGRNLE 503
V G LE
Sbjct: 319 VFGALLE 325
>Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical
protein C55A1.3 protein.
Length = 360
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +3
Query: 6 THFVKTRKMLKLITLLAF 59
+HF+KTR +LK+I+L+ F
Sbjct: 134 SHFIKTRHLLKVISLIGF 151
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 372 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 482
+ +T S + TF LK+P VHI+G + G G
Sbjct: 10 LPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVG 46
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 339 SFSLSTYSTAVMAVTGVGSSIATFLKNLK--LPLNKVHIVGFNLGAHVAGVTGR-NLEGK 509
+F +TYST + T +GS++ T + N + PL + N + V+G L K
Sbjct: 333 AFQHNTYSTTISPTTPIGSTVITVVANSENNTPLTYSLLADTNT-VSIDEVSGNVVLRKK 391
Query: 510 VARITGLDPSARDWENNV 563
+ + L+ +A D EN V
Sbjct: 392 LEKPETLNVTASDGENVV 409
>M98552-7|AAK82925.2| 355|Caenorhabditis elegans Hypothetical
protein ZK370.7 protein.
Length = 355
Score = 27.9 bits (59), Expect = 5.4
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
Frame = +3
Query: 6 THFVKTRKMLKLITLLAFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNPITLTEDHFPT 185
T V ++LKL+ A + CN D+ Q E+ YY NA R ++ F
Sbjct: 76 TSVVLCAEILKLVITFAMFYKECNFDSRQFSEQVSK-----YYINAPRELAKMSVPSF-- 128
Query: 186 GNDPAAPFNNNWDIVVIIHGHSGT-ATTTINPIVKDAF--LRSGNYNVIVVDWSSFSLST 356
A NN D V + + +G TT +V AF + W + +L
Sbjct: 129 ----AYALQNNLDFVGLSNLDAGLYQVTTQLKVVSTAFFMMLFLGRKFSTRRWMAITLLM 184
Query: 357 YSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 461
+ A + + V +S A N K + +IVG +
Sbjct: 185 FGVAFVQMNNVSASEA----NTKRETAENYIVGLS 215
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Frame = +2
Query: 197 CCAL*Q*LGYCRNNTR--------SQWHCYDDDQPY 280
CCA+ +G CR NTR S HCY +D Y
Sbjct: 574 CCAVWGLMGECRKNTRYMACNCRVSCGHCYPEDYNY 609
>AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core
alpha-6-fucosyltransferase protein.
Length = 559
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 102 RFGSLNKYYYYSNAQRNPITLTEDHFPTGN 191
+F SL+ YY+ Q + + + EDH N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505
>AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical
protein F56F11.5 protein.
Length = 509
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 18 KTRKML-KLITLLAFAFAACNGDAIQNLERFGSLNKYYYYS 137
K + M+ +LI ++ FA+ C+G N E+ N Y+S
Sbjct: 236 KAKAMIFRLIYIILFAYMLCSGPFYDNYEKRDEYNFLQYFS 276
>AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl
transferase protein 8 protein.
Length = 559
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 102 RFGSLNKYYYYSNAQRNPITLTEDHFPTGN 191
+F SL+ YY+ Q + + + EDH N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505
>U49830-2|AAV58878.1| 324|Caenorhabditis elegans Hypothetical
protein C33F10.4b protein.
Length = 324
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 436 LSGNLRFFKKVAILDPTPVTAITAVEYVDRLNDDQSTTITL*LP 305
L G ++ FK LDP VTA + V+R N + S T T+ LP
Sbjct: 161 LGGIVKCFK--VKLDPILVTAWNQAQRVERKNMETSFTSTIRLP 202
>U49830-1|AAK31483.1| 458|Caenorhabditis elegans Hypothetical
protein C33F10.4a protein.
Length = 458
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 436 LSGNLRFFKKVAILDPTPVTAITAVEYVDRLNDDQSTTITL*LP 305
L G ++ FK LDP VTA + V+R N + S T T+ LP
Sbjct: 161 LGGIVKCFK--VKLDPILVTAWNQAQRVERKNMETSFTSTIRLP 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,336,939
Number of Sequences: 27780
Number of extensions: 284885
Number of successful extensions: 761
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -