Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e05f
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.10
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.24
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.24
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 30 1.3
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 30 1.3
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein... 29 2.2
At4g21326.1 68417.m03081 subtilase family protein contains simil... 28 3.8
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei... 27 8.9
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.5 bits (73), Expect = 0.10
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 495 NLEGKVARITG 527
+ GK+ + G
Sbjct: 454 TISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +3
Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 495 NLEGKVAR 518
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +3
Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 495 NLEGKVAR 518
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ---L*RYRC 328
NNTRS+ C+ D+ C +V KWQ YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ 310
NNTRS+ C+ D+ C +V KWQ
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647
>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to unknown protein (emb|CAB88055.1)
Length = 212
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 90 QNLERFGSLNKYYYYSNAQRNPITLTEDH---FPTG--NDPAAPFNNNWDIVVIIH 242
++L +GS +Y+Y +N +T T+ + PTG D P N ++V I H
Sbjct: 53 RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108
>At4g21326.1 68417.m03081 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 690
Score = 28.3 bits (60), Expect = 3.8
Identities = 24/86 (27%), Positives = 34/86 (39%)
Frame = +3
Query: 249 SGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 428
S ATTTIN RSG+Y +V F Y + + SS + +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413
Query: 429 PLNKVHIVGFNLGAHVAGVTGRNLEG 506
K +VG + V G + R G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438
>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
protein-related contains weak similarity to CND41,
chloroplast nucleoid DNA binding protein (GI:2541876)
[Nicotiana tabacum]
Length = 452
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 366 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVT 488
A +A S IA + +KLP+ GF+L +V+GVT
Sbjct: 332 AFLAEPAYRSVIAAVRRRVKLPIADALTPGFDLCVNVSGVT 372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,786
Number of Sequences: 28952
Number of extensions: 258417
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -