Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e04f
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   2.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.6  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   3.4  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   3.4  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   4.5  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   7.9  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 360 TRREEHFFYRTNLGT-LKCIFWTFTCKYTKFLFF 458
           T R+ +  Y + + + +  +  TF C+YT+FL F
Sbjct: 332 TSRDRYLVYNSLIKSFVNTVLKTFRCRYTQFLIF 365


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 280 DADSPDASTGRRRESHVENPPVNCSSTAHNK 188
           +A +P +   RRR +H+ NPP    + A N+
Sbjct: 139 NAHAPHSQNRRRRSNHLNNPPEAPITEASNE 169


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 508 RELLIKKMGRTNFLCKQKNKN-FVYLHVNVQN 416
           R +L+  +GR  F+CK K++  F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 22/87 (25%), Positives = 34/87 (39%)
 Frame = -2

Query: 423  SRICILASPNLYGKKNALRGAFTN*RFTKVKPTPPPVRRTLVNCVDPRTRTALTRLPAGA 244
            SR+ I+   +   + N       N R T  K        +L NC+        +R+  G 
Sbjct: 1301 SRLSIIPQESQIFEGNIRENLDPNHRLTDKKIWEVLEIASLKNCISQLEDGLYSRVAEGG 1360

Query: 243  VNLTLRTRQLIVAARLTTKLRKSLSLE 163
             N +   RQLI  AR+     + L L+
Sbjct: 1361 ANFSSGQRQLICLARVLLTSTRILLLD 1387


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 291 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSL-SLEVILPILKA 139
           VDP+T  ALT  P   V  +  + Q    +   +K +K L ++E   P+L+A
Sbjct: 529 VDPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRA 580


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 144 KALALSVDLGSATSLVDTATIAVNTNNRANFILQEICTGTQN 19
           +A ALS  + ++TSL    T A+ TN+++   L E C    N
Sbjct: 447 QAQALSTQISASTSLSTVLTQALKTNDQS---LLESCFNNNN 485


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -2

Query: 96  DTATIAVNTNNRANFILQEIC 34
           D++++  +TNNR + +L+E+C
Sbjct: 92  DSSSLPSSTNNRYSSVLKELC 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,990
Number of Sequences: 5004
Number of extensions: 39916
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)