Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e04f
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    30   1.3  
U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z35400-1|CAA84584.1|  532|Caenorhabditis elegans putative transp...    28   5.4  
U12433-1|AAA20582.1|  532|Caenorhabditis elegans putative transp...    28   5.4  
AL031634-2|CAA21035.1|  351|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    27   7.2  

>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -2

Query: 243 VNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNN 64
           + +  RTR L +  +L  +  K+  L +   ILK   L   LG+A  LV+  T  ++  N
Sbjct: 786 MRICARTRDLRLDIKLRNRFLKAEQLLIKNGILKTEILENLLGTALYLVENVTAWMHMTN 845

Query: 63  RANFILQEI 37
           R +  L+++
Sbjct: 846 RKDKSLKDL 854


>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -2

Query: 333 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -2

Query: 333 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>Z35400-1|CAA84584.1|  532|Caenorhabditis elegans putative
           transposase protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 476 EFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKMLFAARSQTEDSR 339
           EF    + +KLR FA  +  Y F + Q    K  +FA  ++ + SR
Sbjct: 102 EFMTDVRTKKLRSFASMQRRYRFIKTQHDMQKLRVFAKNNEIQCSR 147


>U12433-1|AAA20582.1|  532|Caenorhabditis elegans putative
           transposase protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 476 EFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKMLFAARSQTEDSR 339
           EF    + +KLR FA  +  Y F + Q    K  +FA  ++ + SR
Sbjct: 102 EFMTDVRTKKLRSFASMQRRYRFIKTQHDMQKLRVFAKNNEIQCSR 147


>AL031634-2|CAA21035.1|  351|Caenorhabditis elegans Hypothetical
           protein Y32B12C.2 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 435 KYTKFLF--FCLHKKFVLPIFLINNSRIYYEASLSFFFGL*ITVAIL 569
           KY KF F  FC+     L I ++NNS I + +       + + +A+L
Sbjct: 98  KYQKFKFGRFCVPPDSYLTICIVNNSSILFNSIQDPLISIAVAMAVL 144


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +3

Query: 378 FFYRTNLGTLKCIFWTFTCKYTKFLFFCLHKKFVLPIF--LINNSRIYYEASLSFFFG 545
           F Y T  GT+    W  +C  T FLF        LP +  LI     Y+   LS  +G
Sbjct: 106 FIYIT--GTIVLTTWCTSCACTLFLFINRIVNITLPQYSDLIEAKLAYFSIILSIIYG 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,052
Number of Sequences: 27780
Number of extensions: 241799
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)