Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e03r
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 341  LSWHSGHAWVAGIL*GTLHY 400
            L W SGH   A +   TLHY
Sbjct: 1422 LHWKSGHNGGASLTGYTLHY 1441


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 341  LSWHSGHAWVAGIL*GTLHY 400
            L W SGH   A +   TLHY
Sbjct: 1418 LHWKSGHNGGASLTGYTLHY 1437


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 6   NYASPTCNKYRSMFVYIIYYLSIAL 80
           NY    CN YR ++  I Y   I +
Sbjct: 95  NYKKLYCNNYRKLYYNINYIEQIPI 119


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 277 LDRAGNQVQAAWA 315
           LD++G  VQ +WA
Sbjct: 885 LDKSGRSVQLSWA 897


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 6   NYASPTCNKYRSMFVYIIYYLSIAL 80
           NY    CN Y+ ++  I Y   I +
Sbjct: 95  NYKKLYCNNYKKLYYNINYIEQIPI 119


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 6   NYASPTCNKYRSMFVYIIYYLSIAL 80
           NY    CN Y+ ++  I Y   I +
Sbjct: 95  NYKKLYCNNYKKLYYNINYIEQIPI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,161
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)