Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e03r
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu... 31 0.58
At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar... 29 2.4
At3g25200.1 68416.m03148 hypothetical protein 27 5.4
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 27 7.2
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 27 7.2
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 27 7.2
At3g56040.1 68416.m06226 expressed protein 27 9.5
At1g55460.1 68414.m06343 Kin17 DNA-binding protein-related conta... 27 9.5
At1g02630.1 68414.m00213 equilibrative nucleoside transporter, p... 27 9.5
>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
subunit-related contains weak similarity to
Swiss-Prot:Q13888 TFIIH basal transcription factor
complex p44 subunit (Basic transcription factor 2 44 kDa
subunit, BTF2-p44, General transcription factor IIH
polypeptide 2) [Homo sapiens]
Length = 421
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 396 CNVPHKIPATQACPLCQDRCRQIPGMECP-CSLDLVSRP--VKSHH 268
C+ KI A CP C+ R +P EC C L LVS P +S+H
Sbjct: 290 CHKEVKIGAGYMCPRCKARVCDLP-TECTICGLTLVSSPHLARSYH 334
>At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar to
auxin response factor 10 GI:6165644 from [Arabidopsis
thaliana]; identical to cDNA auxin response factor 10
(ARF10) mRNA, partial cds GI:6165643
Length = 693
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 245 LHASSYNPENKQHNPATFRSQFSAK 171
L+ SSY NK H+PA F S F+ +
Sbjct: 466 LNLSSYTGNNKLHSPAMFLSSFNPR 490
>At3g25200.1 68416.m03148 hypothetical protein
Length = 168
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 203 GCVAYFPDCSCWHEACVMWHVLWWDL 280
G +++F D W V+W +WDL
Sbjct: 41 GMLSFFDDTCTWETRTVLWLSSFWDL 66
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 215 YFPDCSCWHEACVMWHVLWW 274
YF S WH A + +LWW
Sbjct: 300 YFDAHSIWHAATIPLTILWW 319
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 215 YFPDCSCWHEACVMWHVLWW 274
YF S WH A + +LWW
Sbjct: 300 YFDAHSIWHAATIPLTILWW 319
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 215 YFPDCSCWHEACVMWHVLWW 274
YF S WH A + +LWW
Sbjct: 300 YFDAHSIWHAATIPLTILWW 319
>At3g56040.1 68416.m06226 expressed protein
Length = 883
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 144 QERFGLTNYFG*KLGSKRGGVVLLIFRIVAAGMKHALC 257
+ R GL+ FG LG + L+ ++AAG +HALC
Sbjct: 125 ENRGGLSKVFG-YLGLN-SNEMFLVKCVIAAGQEHALC 160
>At1g55460.1 68414.m06343 Kin17 DNA-binding protein-related contains
similarity to zinc finger protein rts2 GB:U16133
GI:563244 from [Saccharomyces cerevisiae]
Length = 411
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 360 CPLCQDRCRQIPGMECPC 307
C +CQ +CR G +C C
Sbjct: 28 CQMCQKQCRDENGFKCHC 45
>At1g02630.1 68414.m00213 equilibrative nucleoside transporter,
putative (ENT8) identical to putative equilibrative
nucleoside transporter ENT8 [Arabidopsis thaliana]
GI:28207664; contains similarity to SWISS-PROT:O54699
equilibrative nucleoside transporter 2 (Equilibrative
nitrobenzylmercaptopurine riboside-insensitive
nucleoside transporter, Equilibrative NBMPR-insensitive
nucleoside transporter, Nucleoside transporter, ei-type)
[Rattus norvegicus]; contains Pfam profile PF01733:
Nucleoside transporter
Length = 389
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 456 SSSHCVYLISCPVVQIKLS*CNVPHKIPATQ 364
+S+H +++S ++ CNV HK+P Q
Sbjct: 184 TSAHSYFIVSSTILLCCFISCNVLHKLPVMQ 214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,605
Number of Sequences: 28952
Number of extensions: 222278
Number of successful extensions: 533
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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