Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e03f
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   4.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   5.5  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   7.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.6  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 131 RLPKHAHYARTDAAKSRVWNAHAAW 205
           R+P+H       A +S VWN  A+W
Sbjct: 454 RIPRHLRSIYPHAYQSYVWNRVASW 478


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 69  SNQLSGCPNQIIIMQRPSQNSGYPSMP 149
           SN  SG P   ++   PS++   PS+P
Sbjct: 403 SNNFSGTPQINVVPSSPSKSQSGPSLP 429


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 176 IWRHLSWHSGHAWVAGI 126
           ++R+  W  GH+W  GI
Sbjct: 507 MFRNFDWFVGHSWATGI 523


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 121 HKIPATQA-CPLCQDRCRQIPGMECPCSLDLVSRPVKSHHR-TCHITHASCQQL 276
           H I  T+A CP   D   +     CPC  + +S  +K H R +C     +C+ +
Sbjct: 430 HPISETRAHCPFATDVLTK-----CPCGKEDISFLLKGHERKSCSDPIPTCENI 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,611
Number of Sequences: 5004
Number of extensions: 43947
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)