Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e03f
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)           29   3.3  
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.6  

>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
          Length = 237

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +1

Query: 58  HCVYLISCPVVQIKLS*CNVPHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHH 237
           +C+YL+   + Q+K   C V + +   + C +CQ          C C ++     V+  +
Sbjct: 90  YCMYLVEYCMCQVKYCMCQVEYCMYQVEYC-MCQVEYCMCQVEYCMCQVEYCMCQVE--Y 146

Query: 238 RTCHITHASCQ 270
             C + +  CQ
Sbjct: 147 CMCQVEYCMCQ 157


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = +2

Query: 95  SNYHNATSLTKFRLPKHAH----YARTDAAKSRVWNAHAAWTWFPARSSPTTEHAT*RML 262
           S+Y +ATS        HAH    YA   ++ + V ++HA  T   A  + +  H T    
Sbjct: 255 SSYAHATSSFAHVTSSHAHVTTSYAHATSSYAHVTSSHAHATSSYAHVTTSYAHVTSSHA 314

Query: 263 HA-SSYNPENKQHNPAT 310
           HA SSY      H   T
Sbjct: 315 HATSSYAHVTSSHAHVT 331


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 116 SLTKFRLPKHAHYARTDAAKSRVWNAHAAWTWFPAR-SSPTTEHAT*RMLHASSYNPEN 289
           S T F  P+H  ++    A    +  HA +  FP+R S+  +  A    L + S++P+N
Sbjct: 133 SPTSFVPPRHLGFSDPSMASGHSFMCHAQYDPFPSRLSTNASPVAMEPFLWSMSHSPQN 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,018,608
Number of Sequences: 59808
Number of extensions: 343839
Number of successful extensions: 884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)