Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e03f
(546 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M61951-1|AAA59486.1| 1786|Homo sapiens laminin B1 protein. 31 2.0
M61916-1|AAA59482.1| 1786|Homo sapiens laminin B1 protein. 31 2.0
M55370-1|AAA59485.1| 1786|Homo sapiens laminin B1 protein. 31 2.0
BC113455-1|AAI13456.1| 1786|Homo sapiens laminin, beta 1 protein. 31 2.0
BC026018-1|AAH26018.2| 1083|Homo sapiens LAMB1 protein protein. 31 2.0
L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain p... 30 4.6
AC002044-1|AAC31674.1| 1190|Homo sapiens Alpha-fetoprotein enhan... 30 4.6
BC032846-1|AAH32846.2| 304|Homo sapiens developmental pluripote... 30 6.1
AK001575-1|BAA91765.1| 294|Homo sapiens protein ( Homo sapiens ... 30 6.1
U02609-1|AAA18945.1| 519|Homo sapiens transducin-like protein p... 29 8.0
>M61951-1|AAA59486.1| 1786|Homo sapiens laminin B1 protein.
Length = 1786
Score = 31.5 bits (68), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 305 RGCVAYFPDCSCWHEACVMWHVLWWDLTGRETR 207
RG FPDC+ H+ +W V+ +LT R R
Sbjct: 1167 RGYSGVFPDCTPCHQCFALWDVIIAELTNRTHR 1199
>M61916-1|AAA59482.1| 1786|Homo sapiens laminin B1 protein.
Length = 1786
Score = 31.5 bits (68), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 305 RGCVAYFPDCSCWHEACVMWHVLWWDLTGRETR 207
RG FPDC+ H+ +W V+ +LT R R
Sbjct: 1167 RGYSGVFPDCTPCHQCFALWDVIIAELTNRTHR 1199
>M55370-1|AAA59485.1| 1786|Homo sapiens laminin B1 protein.
Length = 1786
Score = 31.5 bits (68), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 305 RGCVAYFPDCSCWHEACVMWHVLWWDLTGRETR 207
RG FPDC+ H+ +W V+ +LT R R
Sbjct: 1167 RGYSGVFPDCTPCHQCFALWDVIIAELTNRTHR 1199
>BC113455-1|AAI13456.1| 1786|Homo sapiens laminin, beta 1 protein.
Length = 1786
Score = 31.5 bits (68), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 305 RGCVAYFPDCSCWHEACVMWHVLWWDLTGRETR 207
RG FPDC+ H+ +W V+ +LT R R
Sbjct: 1167 RGYSGVFPDCTPCHQCFALWDVIIAELTNRTHR 1199
>BC026018-1|AAH26018.2| 1083|Homo sapiens LAMB1 protein protein.
Length = 1083
Score = 31.5 bits (68), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 305 RGCVAYFPDCSCWHEACVMWHVLWWDLTGRETR 207
RG FPDC+ H+ +W V+ +LT R R
Sbjct: 464 RGYSGVFPDCTPCHQCFALWDVIIAELTNRTHR 496
>L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain
protein protein.
Length = 3703
Score = 30.3 bits (65), Expect = 4.6
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +1
Query: 115 VPHKIPATQACPLCQDRCRQIPGMECP-CSLDLVSRPVKSHHRTCHITHASCQQLQSGK 288
VPH A C L C G+ECP C L S H T + SC+ L+ K
Sbjct: 617 VPHHQHAGSLCELGVGECPSGSGVECPKCDTVLGSSRSLGGHMTMMHSRNSCKTLKCPK 675
>AC002044-1|AAC31674.1| 1190|Homo sapiens Alpha-fetoprotein enhancer
binding protein (3' partial) protein.
Length = 1190
Score = 30.3 bits (65), Expect = 4.6
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +1
Query: 115 VPHKIPATQACPLCQDRCRQIPGMECP-CSLDLVSRPVKSHHRTCHITHASCQQLQSGK 288
VPH A C L C G+ECP C L S H T + SC+ L+ K
Sbjct: 617 VPHHQHAGSLCELGVGECPSGSGVECPKCDTVLGSSRSLGGHMTMMHSRNSCKTLKCPK 675
>BC032846-1|AAH32846.2| 304|Homo sapiens developmental pluripotency
associated 4 protein.
Length = 304
Score = 29.9 bits (64), Expect = 6.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -2
Query: 200 LHGHSIPGI---WRHLSWHSGHAWV 135
+HG S+P W HL +H+G AWV
Sbjct: 233 VHGKSLPADTDGWVHLQFHAGQAWV 257
>AK001575-1|BAA91765.1| 294|Homo sapiens protein ( Homo sapiens
cDNA FLJ10713 fis, clone NT2RP3000980. ).
Length = 294
Score = 29.9 bits (64), Expect = 6.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -2
Query: 200 LHGHSIPGI---WRHLSWHSGHAWV 135
+HG S+P W HL +H+G AWV
Sbjct: 223 VHGKSLPADTDGWVHLQFHAGQAWV 247
>U02609-1|AAA18945.1| 519|Homo sapiens transducin-like protein
protein.
Length = 519
Score = 29.5 bits (63), Expect = 8.0
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 119 LTKFRLPKHAHYART-DAAKSRVWNAHAAWTWFPARSSPTTEHAT*RM 259
L K K+ RT DA + +VW A WT P+ T E ++ RM
Sbjct: 472 LVKLWTIKNNECVRTLDAHEDKVWGLQAGWTTTPSLGPVTPESSSGRM 519
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,262,837
Number of Sequences: 237096
Number of extensions: 1642631
Number of successful extensions: 6674
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6674
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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