Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e03f
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      27   6.7  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    27   6.7  
AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor o...    27   6.7  
Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 112 NVPHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCQQLQS 282
           N    IPAT    +   +CR    + C  S D  S   K H     I++ + Q +QS
Sbjct: 466 NSTWSIPATLTFAITDLKCRINSVLNCVISFDSSSSSDKQHQNYWSISNNNTQLMQS 522


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 112 NVPHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCQQLQS 282
           N    IPAT    +   +CR    + C  S D  S   K H     I++ + Q +QS
Sbjct: 466 NSTWSIPATLTFAITDLKCRINSVLNCVISFDSSSSSDKQHQNYWSISNNNTQLMQS 522


>AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform b protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 112 NVPHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCQQLQS 282
           N    IPAT    +   +CR    + C  S D  S   K H     I++ + Q +QS
Sbjct: 466 NSTWSIPATLTFAITDLKCRINSVLNCVISFDSSSSSDKQHQNYWSISNNNTQLMQS 522


>Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical
           protein T23F11.6 protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 190 CPCSLDLVSRPVKSHHRTCHITHASCQ 270
           CP SLD ++ P    HR C +T  SCQ
Sbjct: 26  CPPSLDSLNLPPPVIHREC-LTRNSCQ 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,329
Number of Sequences: 27780
Number of extensions: 253430
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)