Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e03f
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu...    31   0.66 
At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar...    29   2.7  
At5g08440.1 68418.m00994 expressed protein                             28   4.7  
At3g25200.1 68416.m03148 hypothetical protein                          27   6.2  
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ...    27   8.2  
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ...    27   8.2  
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ...    27   8.2  

>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
           subunit-related contains weak similarity to
           Swiss-Prot:Q13888 TFIIH basal transcription factor
           complex p44 subunit (Basic transcription factor 2 44 kDa
           subunit, BTF2-p44, General transcription factor IIH
           polypeptide 2) [Homo sapiens]
          Length = 421

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 109 CNVPHKIPATQACPLCQDRCRQIPGMECP-CSLDLVSRP--VKSHH 237
           C+   KI A   CP C+ R   +P  EC  C L LVS P   +S+H
Sbjct: 290 CHKEVKIGAGYMCPRCKARVCDLP-TECTICGLTLVSSPHLARSYH 334


>At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar to
           auxin response factor 10 GI:6165644 from [Arabidopsis
           thaliana]; identical to cDNA auxin response factor 10
           (ARF10) mRNA, partial cds GI:6165643
          Length = 693

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 260 LHASSYNPENKQHNPATFRSQFSAK 334
           L+ SSY   NK H+PA F S F+ +
Sbjct: 466 LNLSSYTGNNKLHSPAMFLSSFNPR 490


>At5g08440.1 68418.m00994 expressed protein
          Length = 726

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 511 NIKLNYASPTCNKYRSMFVYIIYYL--SIALH*KSKYNINTAYHYVLLFM*LQERFGLT 341
           NI+L YA     + RS+FV I+  L    +LH +   + +      +LF  LQE+  +T
Sbjct: 290 NIRLTYALQAAEQERSLFVSILLPLLSEYSLHPQISDSQSIVSSVKVLFRHLQEKLNVT 348


>At3g25200.1 68416.m03148 hypothetical protein
          Length = 168

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 302 GCVAYFPDCSCWHEACVMWHVLWWDL 225
           G +++F D   W    V+W   +WDL
Sbjct: 41  GMLSFFDDTCTWETRTVLWLSSFWDL 66


>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
           profile PF04080: Per1-like
          Length = 342

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 290 YFPDCSCWHEACVMWHVLWW 231
           YF   S WH A +   +LWW
Sbjct: 300 YFDAHSIWHAATIPLTILWW 319


>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
           profile PF04080: Per1-like
          Length = 342

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 290 YFPDCSCWHEACVMWHVLWW 231
           YF   S WH A +   +LWW
Sbjct: 300 YFDAHSIWHAATIPLTILWW 319


>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
           profile PF04080: Per1-like
          Length = 342

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 290 YFPDCSCWHEACVMWHVLWW 231
           YF   S WH A +   +LWW
Sbjct: 300 YFDAHSIWHAATIPLTILWW 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,066
Number of Sequences: 28952
Number of extensions: 227004
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)