Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e02r
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 673 RIAKNYXEEKNASEGSDPRHP*STRRENKKKETCK 569
           RI +      N S    PR P S  R + K+E  K
Sbjct: 306 RIHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIK 340


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -3

Query: 322 KMGH-EIHMEPSEQSCLK 272
           +M H E+HM+P +++C +
Sbjct: 385 RMQHCELHMQPRKKNCCR 402


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -3

Query: 322 KMGH-EIHMEPSEQSCLK 272
           +M H E+HM+P +++C +
Sbjct: 385 RMQHCELHMQPRKKNCCR 402


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 306 YTWNPQNNPVLNTNLKLKKQYNAV 235
           Y +N  NN   N N   K  YN +
Sbjct: 94  YKYNYNNNNYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 306 YTWNPQNNPVLNTNLKLKKQYNAV 235
           Y +N  NN   N N   K  YN +
Sbjct: 94  YKYNYNNNNYNNNNYNKKLYYNII 117


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 LTFSLFYLNFSLIYEHFLI 218
           L F+L Y+N  + Y+H +I
Sbjct: 56  LNFNLNYVNKGVTYKHTII 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,498
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)