Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e02r
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 91 5e-19
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 57 9e-09
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 57 1e-08
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 57 1e-08
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 57 1e-08
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 53 2e-07
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 53 2e-07
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 53 2e-07
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 53 2e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 53 2e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 52 4e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 52 4e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 52 5e-07
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 52 5e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 51 6e-07
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 48 4e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 48 4e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 48 8e-06
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 48 8e-06
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 48 8e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 48 8e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 47 1e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 47 1e-05
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 46 2e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 46 2e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 46 2e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 46 3e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 46 3e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 3e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 3e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 45 4e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 45 4e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 5e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 5e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 45 5e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 44 7e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 44 7e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 44 7e-05
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 44 7e-05
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 44 9e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 9e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 44 1e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 1e-04
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 43 2e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 43 2e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 43 2e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 2e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 2e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 42 3e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 42 3e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 42 4e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 41 7e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 41 7e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 7e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 7e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 41 9e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.001
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 40 0.001
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 40 0.001
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 0.002
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.002
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 40 0.002
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 40 0.002
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 39 0.003
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 39 0.003
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.006
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 38 0.008
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.008
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.008
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 37 0.011
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 37 0.011
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.014
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 37 0.014
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 37 0.014
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 37 0.014
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 37 0.014
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 37 0.014
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.025
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 36 0.025
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.033
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 36 0.033
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.033
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.033
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.033
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.033
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 35 0.043
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 35 0.043
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.043
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 35 0.043
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 35 0.057
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.057
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.057
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.057
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 35 0.057
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 34 0.076
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 34 0.076
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 34 0.076
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 34 0.10
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 34 0.10
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 33 0.13
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 33 0.13
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.13
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.13
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.13
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.13
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.13
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.13
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 33 0.13
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.13
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.13
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.17
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.17
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.17
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.17
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 33 0.23
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 33 0.23
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 33 0.23
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.23
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.23
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 33 0.23
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 33 0.23
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.23
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 32 0.31
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 32 0.31
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 32 0.31
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 32 0.31
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 32 0.31
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 32 0.40
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 31 0.53
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.53
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 31 0.53
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 31 0.71
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 31 0.71
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 31 0.71
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.71
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.71
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 31 0.93
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 30 1.2
At5g18700.1 68418.m02219 protein kinase-related contains protein... 30 1.2
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 30 1.2
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 1.2
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.2
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 2.8
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 3.8
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 5.0
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 5.0
At4g10610.1 68417.m01735 RNA-binding protein, putative 28 5.0
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 28 6.6
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 28 6.6
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 28 6.6
At1g11000.1 68414.m01263 seven transmembrane MLO family protein ... 28 6.6
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 8.7
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 27 8.7
At2g22460.1 68415.m02663 expressed protein contains Pfam profile... 27 8.7
At1g33940.1 68414.m04206 hypothetical protein 27 8.7
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 91.5 bits (217), Expect = 5e-19
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = -1
Query: 564 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
++Y+G IPHGFYE ++ +FSQFG V RV R+++TG+SK + F++F DP VA+I A
Sbjct: 61 VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120
Query: 384 MNNYLMGKRLIKAAYIPPD 328
MN+YL+ + ++K I P+
Sbjct: 121 MNDYLLMEHMLKVHVIEPE 139
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E ++ +YFS FG V +++ R TGR++G+ FV F DPAVA+IV
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 387 TMNNYLMGKRLIKA-AYIPPDKRRWAMR 307
+N + RL++A +P D + R
Sbjct: 66 EKHN--IDGRLVEAKKAVPRDDQNMVNR 91
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G +P E YF QFG ++ V+ T R +G+ F+ + + AV +++ +T
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 384 MNNYLMGKRLIKAAYIPPD 328
+ L GK + +P +
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E ++ +YFS FG V +++ R TGR++G+ FV F DPAVA+IV
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 387 TMNNYLMGKRLIKA-AYIPPDKRRWAMR 307
+N + RL++A +P D + R
Sbjct: 66 EKHN--IDGRLVEAKKAVPRDDQNMVNR 91
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G +P E YF QFG ++ V+ T R +G+ F+ + + AV +++ +T
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 384 MNNYLMGKRLIKAAYIPPD 328
+ L GK + +P +
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P+ F E Q+ + FG + +++ R TG SKGYAF + DP+V I +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 381 NNYLMGKRLI 352
N MG + +
Sbjct: 437 NGIKMGDKTL 446
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P+ F E Q+ + FGG+ +++ R TG SKGYAF + D +V I +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 381 NNYLMGKRLI 352
N MG + +
Sbjct: 421 NGIKMGDKTL 430
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P+ F E Q+ + FGG+ +++ R TG SKGYAF + D +V I +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 381 NNYLMGKRLI 352
N MG + +
Sbjct: 421 NGIKMGDKTL 430
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P+ F E Q+ + FGG+ +++ R TG SKGYAF + D +V I +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 381 NNYLMGKRLI 352
N MG + +
Sbjct: 421 NGIKMGDKTL 430
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G IP E + FSQ+G + + +IR + TG+SKG+AF+ + D + + +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 381 NNYLMGKRLIK 349
N L+ R IK
Sbjct: 98 NGALVLGRTIK 108
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E ++ YFS +G V ++R R TGR++G+ F+ F DP V++ V
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-- 63
Query: 387 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 304
M+ +++ R ++A +P D ++ R+
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 92
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G +P E + YF QFG +++ V+ T R +G+ F+ F D AV +++ +T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 384 MNNYLMGKRLIKAAYIPPD 328
+ L GK + +P +
Sbjct: 172 FHE-LNGKLVEVKRAVPKE 189
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E ++ YFS +G V ++R R TGR++G+ F+ F DP V++ V
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-- 63
Query: 387 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 304
M+ +++ R ++A +P D ++ R+
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 92
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G +P E + YF QFG +++ V+ T R +G+ F+ F D AV +++ +T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 384 MNNYLMGKRLIKAAYIPPD 328
+ L GK + +P +
Sbjct: 172 FHE-LNGKLVEVKRAVPKE 189
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E ++ YFS +G V ++R R TGR++G+ F+ F DP V++ V
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-- 63
Query: 387 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 304
M+ +++ R ++A +P D ++ R+
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 92
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G +P E + YF QFG +++ V+ T R +G+ F+ F D AV +++ +T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 384 MNNYLMGKRLIKAAYIPPD 328
+ L GK + +P +
Sbjct: 172 FHE-LNGKLVEVKRAVPKE 189
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E ++ +YF ++G + ++R R TGR++G+ F+ F DP+VA+ V
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV-- 72
Query: 387 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 304
M+ +++ R ++A +P D ++ R+
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 101
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P E + YF QFG +++ V+ T R +G+ F+ F +V
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 381 NNYLMGKRLIKAAYIPPD 328
+ L GK + +P +
Sbjct: 184 FHELNGKMVEVKRAVPKE 201
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/106 (30%), Positives = 51/106 (48%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E+ + +YFS FG V V+R + TGR +G+ FV F DPAV V +
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 387 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKK 250
++ +K A ++ T+N N N++ KK
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKK 111
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P + YF +G VS+ ++ + T R +G+ FV F +V
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 381 NNYLMGKRLIKAAYIPPD 328
+ L GK++ +P D
Sbjct: 172 FHDLNGKQVEVKRALPKD 189
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G +P + + FS FG + +VI+ R TG SKGY FV++ D +A + M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 381 NNY 373
N Y
Sbjct: 542 NGY 544
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G +P + + FS FG + +VI+ R TG SKGY FV++ D +A + M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 381 NNY 373
N Y
Sbjct: 542 NGY 544
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + M +YF QFG + VI + TGRSKGY FV F + A + M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 381 NNYLMGKR 358
N + G+R
Sbjct: 84 NPVIDGRR 91
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G+IP+ E Q+ + + G V + R++ R TG+ KGY F E+ D A +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 381 NNYLMGKRLIKAAYIPPDK 325
+Y + R ++ + DK
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G + G EH + FS F GV+ RV+ ++ TGRS+GY FV F A M
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 381 N 379
N
Sbjct: 93 N 93
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VYLG IP E + + G V+ R++R + +G KGYAFV F +A +T+
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 381 NNY-LMGKRL 355
NN GKR+
Sbjct: 154 NNTDFRGKRI 163
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFG-GVSNCRVIRS-RRTGRSKGYAFVEFHDPAVAQIVAE 388
++LG++P + E + + ++ G GV + + + GR++G+AF+E+++ A A+ +
Sbjct: 174 LFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQ 233
Query: 387 TMNN 376
M+N
Sbjct: 234 KMSN 237
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
++ G + + + +++ F++F + +VIR +RTG++KGY FV F +PA + M
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 381 NNYLMGKRLIK 349
N +G R IK
Sbjct: 199 NGKYVGNRPIK 209
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + E+ + F+Q G ++ +VIR++ TG+S+GY F+EF +VA+ V +T
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 381 N 379
N
Sbjct: 122 N 122
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
+++G + ++ ++ F +G V +V+ R TGRSKGY FV F D
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G++P Q+ Q F G V VI + TGRS+G+ FV + + A+
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 381 NNY-LMGKRLIKAAYIPPDKR 322
N Y L G+ L A PP KR
Sbjct: 153 NGYELDGRPLRVNAGPPPPKR 173
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++ G + + FS+ G V RVI R +GRSKG+ FV + Q +++
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 381 NNY-LMGKRL-IKAAYIPPDKRRW 316
+ L G+++ + A P +R++
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQY 289
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + + Q+F Q+G + VI + TGRSKGY FV F DP A+
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 381 NNYLMGKR 358
+ G+R
Sbjct: 86 TPIIDGRR 93
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 400
V++G + ++ + YF QFG + VI + +GRSKGY FV F DP AQ
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 400
V++G + ++ + YF QFG + VI + +GRSKGY FV F DP AQ
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = -1
Query: 564 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
++++G + + ++ SQ+G V + R +G+SKGY VEF+D A A E
Sbjct: 203 MLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEG 262
Query: 384 MNNYLM-GKRLIKAAYIPPDKRRWAMRYTW-NPQNNPVLN 271
MN ++ GK + A P ++ +T N N + N
Sbjct: 263 MNGFIFNGKACVVAFASPETLKQMGANFTGRNQGQNQIQN 302
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G I E ++ YF FG V +++ R TGR++G+ FV F DP VA+ V +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-LL 66
Query: 381 NNYLMGKRLIKAAYIPPD 328
+ + GK + +P D
Sbjct: 67 KHIIDGKIVEAKKAVPRD 84
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G + E + +YF+QFG +++ V+ RT R +G+ F+ + + AV +++ +T
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 384 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWN 295
+ L GK + +P D MR N
Sbjct: 168 FHE-LNGKMVEVKLAVPKDMALNTMRNQMN 196
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G I E ++ YF FG V +++ R TGR++G+ FV F DP VA+ V +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-LL 66
Query: 381 NNYLMGKRLIKAAYIPPD 328
+ + GK + +P D
Sbjct: 67 KHIIDGKIVEAKKAVPRD 84
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G + E + +YF+QFG +++ V+ RT R +G+ F+ + + AV +++ +T
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 384 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWN 295
+ L GK + +P D MR N
Sbjct: 168 FHE-LNGKMVEVKLAVPKDMALNTMRNQMN 196
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+ + ++P E + + FS FG ++ ++I+ RSKGYAF++F A + ETM
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 381 NNYLMGKRLIKAAYIPPDKR 322
+ + R+I P KR
Sbjct: 102 DRRMYNGRMIYIDIAKPGKR 121
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/83 (25%), Positives = 48/83 (57%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+YL ++ + ++ + FS++G V++C+V+ + + G S+G+ FV + +P A + + M
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388
Query: 381 NNYLMGKRLIKAAYIPPDKRRWA 313
N ++G++ + A + R A
Sbjct: 389 NGKMIGRKPLYVALAQRKEERQA 411
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G V++ ++ + + FS FG + +C+V GRSKGY FV+F AQ +
Sbjct: 132 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAID 190
Query: 387 TMNNYLMGKRLI 352
+N L+ + +
Sbjct: 191 KLNGMLLNDKQV 202
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G + E + F+Q V N RV R T RS GYA+V F +P A E++
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 105
Query: 381 N 379
N
Sbjct: 106 N 106
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + E+ +T FSQ G + + +VIR++ TG+ +GY F+EF A A+ +T
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 381 NNYLM 367
N M
Sbjct: 86 NGTQM 90
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFS-QFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
+++G + ++ + + F + V +V+ TGRSKGY FV+F + +
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 384 MNNYLMGKRLIKAAYIPPDK 325
MN R ++ + P K
Sbjct: 178 MNGLYCSTRPMRISAATPKK 197
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+ + ++ E ++ + FSQ G V ++ +KGY +V+F A+ + M
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGYGYVQFKTRPSAEEAVQRM 292
Query: 381 NNYLMGKRLIKAAYIP-PDKRRWAMRYTWNPQN 286
++G++ ++ ++ P + W + N N
Sbjct: 293 QGQVIGQQAVRISWSKNPGQDGWVTQADPNQWN 325
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 378 NYLMGKRLI 352
+ R+I
Sbjct: 69 GKELDGRVI 77
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 378 NYLMGKRLI 352
+ R+I
Sbjct: 69 GKELDGRVI 77
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 378 NYLMGKRLI 352
+ R+I
Sbjct: 69 GKELDGRVI 77
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + E + + F+++G V + RVI R TGRS+G+ FV F A + +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 381 NNYLMGKRLIKAAY 340
+ + R++K Y
Sbjct: 102 DGRDLHGRVVKVNY 115
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 349
E ++ + FS+FG V+N ++I + RT +S GY +V F+ AQ E MN R I
Sbjct: 90 EGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFIL 149
Query: 348 AAYIPPDKRR 319
+ P R
Sbjct: 150 VKFGQPGLSR 159
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + + ++F Q+G + VI + TGRSKGY FV F DP A+
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 381 NNYLMGKR 358
+ G+R
Sbjct: 86 TPIIDGRR 93
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G++P ++ + FS+ G V + RV+ R TGRS+G+ FV+ + + +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 381 NNYLMGKRLIKAAYIPPDKRR 319
+ + R IK RR
Sbjct: 269 DGQNLEGRAIKVNVAEERTRR 289
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + G + + F+ FG V + +VI R TGRS+G+ FV F+D A M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 381 NNYLMGKRLIK 349
+ + R I+
Sbjct: 97 DGKELNGRHIR 107
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + G + + F+ FG V + +VI R TGRS+G+ FV F+D A M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 381 NNYLMGKRLIK 349
+ + R I+
Sbjct: 97 DGKELNGRHIR 107
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/102 (27%), Positives = 46/102 (45%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++ ++ + + FS FG + +C+V TGRSKGY FV+F AQ +
Sbjct: 136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAID 194
Query: 387 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNL 262
+N LM + + + + R T P+ V NL
Sbjct: 195 KLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNL 236
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/68 (25%), Positives = 40/68 (58%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+YL ++ + ++ + FS++G V++ +V+ + + G S+G+ FV + +P A M
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392
Query: 381 NNYLMGKR 358
N ++G++
Sbjct: 393 NGKMIGRK 400
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+ ++P E ++ + F +FG +S+ V+R ++G S+ + FV F A E M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 381 NNYLMG 364
N +G
Sbjct: 290 NGISLG 295
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + E+ + F+ G + + +VIR+++TG+ +GY F+EF A A+ V +T
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 381 NN 376
NN
Sbjct: 124 NN 125
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYF-SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
+++G + ++ + + F + + V +V+ R TGR+KGY FV F D + QI A T
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES-EQIRAMT 215
Query: 384 MNN 376
N
Sbjct: 216 EMN 218
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + E+ + F+ G + + +VIR+++TG+ +GY F+EF A A+ V +T
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 381 NN 376
NN
Sbjct: 124 NN 125
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYF-SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
+++G + ++ + + F + + V +V+ R TGR+KGY FV F D + QI A T
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES-EQIRAMT 215
Query: 384 MNN 376
N
Sbjct: 216 EMN 218
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/115 (26%), Positives = 56/115 (48%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++ ++P+ E ++ ++FS FG +S ++ + T RS+G A++ + P A E
Sbjct: 261 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 320
Query: 387 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSDA 223
++N RL+ +I P K R N +N L K K++ S+A
Sbjct: 321 ELDNSSFQGRLL---HILPAKHRETSDKQVNDTSN--LPKTFKQKREEQRKASEA 370
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+ ++ Q FS FG + + R+ + + G+ GYAFVEF
Sbjct: 682 KRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEF 716
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G I E ++ ++F+ +G VS V+R + TGR +G+ FV F DP+V V +
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G +P + + QYF +G V++ ++ + T R +G+ FV F + AV ++ +T
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 384 MNNYLMGKRLIKAAYIPPD 328
++ L GK++ +P D
Sbjct: 172 FHD-LSGKQVEVKRALPKD 189
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + H E + FS G VS+ +VIR++ T +S+GY FVEF A A+ V +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 381 NNYLM 367
+ +M
Sbjct: 170 SGSVM 174
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/82 (25%), Positives = 41/82 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G I + + Q FSQFG V + ++ KG FV+F D A+ E++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI------PVGKGCGFVQFADRKSAEDAIESL 376
Query: 381 NNYLMGKRLIKAAYIPPDKRRW 316
N ++GK ++ ++ ++W
Sbjct: 377 NGTVIGKNTVRLSWGRSPNKQW 398
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFS-QFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
V++G + + + + FS ++ V + +V+ TGRSKGY FV F D
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 384 MNNYLMGKRLIKAAYIPPDK 325
MN R ++ P +
Sbjct: 264 MNGAYCSNRQMRVGIATPKR 283
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + + Q FS F S+ RV+ ++TGRS+G+ FV F + AQ M
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 381 NNYLMGKRLIK 349
N + R I+
Sbjct: 206 NGKWLSSRQIR 216
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
VY+G++P ++ Q FS+ G V RV+ R TGRS+G+ FV D
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G++ + + F Q G V VI +R T +S+G+ FV A+ E
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 381 NNYLMGKRLI 352
N Y + RL+
Sbjct: 212 NRYDLNGRLL 221
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G++ Q+ Q F G V VI + TGRS+G+ FV A + A+
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 381 NNY-LMGKRLIKAAYIPPDKR 322
N Y G+ L A PP KR
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKR 181
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G++ G + + F++ G V RVI R +GRSKG+ FV Q ++
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 381 NNYLMGKRLIKAA 343
N + R I+ +
Sbjct: 311 NGADLDGRQIRVS 323
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G++ Q+ Q F G V VI + TGRS+G+ FV A + A+
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 381 NNY-LMGKRLIKAAYIPPDKR 322
N Y G+ L A PP KR
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKR 181
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G++ G + + F++ G V RVI R +GRSKG+ FV Q ++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 381 NNYLMGKRLIKAA 343
N + R I+ +
Sbjct: 319 NGADLDGRQIRVS 331
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G I + E + + FS++G V + ++I R TGRS+G+AFV F A +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLD 95
Query: 381 NNYLMGKRL 355
L G+R+
Sbjct: 96 GQDLHGRRI 104
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + E Q+ F ++G ++ C+++ R TGR +G+ F+ F D A + M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 381 NNYLMGKRLIKAAYIPP 331
+ +G ++I P
Sbjct: 74 HGRELGNKVISVNKAEP 90
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + E Q+ F ++G ++ C+++ R TGR +G+ F+ F D A + M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 381 NNYLMGKRLIKAAYIPP 331
+ +G ++I P
Sbjct: 74 HGRELGNKVISVNKAEP 90
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + +M +YF QFG + +I + TG+SKGY FV F D A
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 381 NNYLMGKR 358
N + G++
Sbjct: 79 NPVIDGRK 86
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + + + FS+FG + +C+++ R TGRS+G+ F+ F D M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 381 NNYLMGKRLIKAAYIPP 331
+ G R+I P
Sbjct: 69 HGRDFGDRVISVNRAEP 85
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
V++G + +H +T+ F + V +V+ R TGRSKGY FV F D + QI A T
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES-EQIRAMT 233
Query: 384 MNN 376
N
Sbjct: 234 EMN 236
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + E+ + F G + +VIR+++ G S+GY F+EF + A A+ +T
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 381 N 379
N
Sbjct: 142 N 142
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + E + + F++FG V + ++I R TGRSKG+ FV F D + + MN
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 378 NYLMGKRLIKA 346
+ R I A
Sbjct: 107 GQELDGRNITA 117
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + ++ M ++F QFG + VI + +GRSKGY FV F + A+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 381 NNYLMGKR 358
+ G+R
Sbjct: 75 TPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + ++ M ++F QFG + VI + +GRSKGY FV F + A+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 381 NNYLMGKR 358
+ G+R
Sbjct: 75 TPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + ++ M ++F QFG + VI + +GRSKGY FV F + A+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 381 NNYLMGKR 358
+ G+R
Sbjct: 75 TPVIDGRR 82
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
E ++ + FS+FG V+N ++I + RT +S GY +V F+ AQ E MN
Sbjct: 71 EGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = -1
Query: 564 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
LV LG IP + Y S+FG + +C V++ R TGRS+G+ +V F A+ +
Sbjct: 5 LVVLG-IPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 384 MNNYLMGKRLIKAAYIPP 331
+ +G R+++ P
Sbjct: 63 -GEHFLGNRILEVKVATP 79
Score = 34.3 bits (75), Expect = 0.076
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVA 391
+++G +P + YF +FG + + + + + +G+ FV F + VA VA
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA 298
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/76 (25%), Positives = 41/76 (53%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +Y+G++P+ +++Q F + G V + +++ + T RS+G+ FV A+ +
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 387 TMNNYLMGKRLIKAAY 340
N+ +G R +K +
Sbjct: 176 MFNSSQIGGRTVKVNF 191
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY G++ + F GV +VI R TGRS+G+ F+ F Q TM
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 381 NNYLMGKRLIK 349
N + R ++
Sbjct: 281 NGVEVEGRALR 291
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G + E + +YF+QFG +++ V+ RT R +G+ F+ + + AV +++ +T
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 384 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWN 295
+ L GK + +P D MR N
Sbjct: 95 FHE-LNGKMVEVKLAVPKDMALNTMRNQMN 123
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++ +IP F + ++ F FG V + +V + TG SK + FV + A AQ + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 381 N-NYLMGKRL 355
N +L GK+L
Sbjct: 411 NGRHLGGKKL 420
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + +M +YF QFG + +I + TG+SKGY FV F + A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 381 NNYLMGKR 358
N + G++
Sbjct: 79 NPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + +M +YF QFG + +I + TG+SKGY FV F + A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 381 NNYLMGKR 358
N + G++
Sbjct: 79 NPVIDGRK 86
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + + FS F S+ RV+ ++TGRS+G+ FV F + AQ M
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 381 NNYLMGKRLIK 349
N + R I+
Sbjct: 210 NGKWVSSRQIR 220
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY G+I E + + F+ G + +C++IR ++ Y FV + D A + T+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCASMAIMTL 120
Query: 381 N 379
N
Sbjct: 121 N 121
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G +P + + +F +FG + + V+ R T RS+GY FV F D A +
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
Query: 381 NNYLMGK 361
N + G+
Sbjct: 75 NPTIEGR 81
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/78 (25%), Positives = 42/78 (53%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G + ++F ++G +++ ++R R TG+ +G+ F+ F DP+V V E
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 387 TMNNYLMGKRLIKAAYIP 334
+ + GK++ IP
Sbjct: 79 D-THVINGKQVEIKRTIP 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G IP E ++ +F+++G V +VIR T RS+G+ FV F V +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 381 NNYLMGKRLIKAAYIPPDK 325
N M ++ P K
Sbjct: 171 NMIDMADTQVEIKKAEPKK 189
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/78 (25%), Positives = 42/78 (53%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G + ++F ++G +++ ++R R TG+ +G+ F+ F DP+V V E
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 387 TMNNYLMGKRLIKAAYIP 334
+ + GK++ IP
Sbjct: 79 D-THVINGKQVEIKRTIP 95
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAV 406
+++G IP E ++ +F+++G V +VIR T RS+G+ FV F V
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G V++ ++P + F +FG + +C+V + G+S+GY FV+F A +
Sbjct: 112 GNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQ 170
Query: 387 TMNNYLMGKRLI 352
T+N+ ++ + I
Sbjct: 171 TLNSTIVADKEI 182
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G + E + F++F +++ R+ + +GRS Y + F A + E
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 381 NNYLMGKRLIKAAYI--PPDKRR 319
NN L+ ++I+ + PD RR
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARR 108
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ E + + F++FG + + + + +GYAFV F +P A+ AET+
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 381 NNYLMGKRLI 352
N G + +
Sbjct: 262 NGTKFGSKCL 271
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ E ++ ++FSQ G +++ +++ + G+SKG+ FV F P A +T
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 381 NNYLM-GKRLIKAAYIPPDKRRWAMR 307
+ + GK L A + R+ ++
Sbjct: 365 HGQMFHGKPLYVAIAQKKEDRKMQLQ 390
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + + + F+Q+G V + ++I R TGRS+G+ FV F D + E MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 378 NYLMGKRLI 352
+ R I
Sbjct: 71 GQDLDGRSI 79
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + + + F+Q+G V + ++I R TGRS+G+ FV F D + E MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 378 NYLMGKRLI 352
+ R I
Sbjct: 71 GQDLDGRSI 79
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = -1
Query: 549 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 370
++ H + + + F QFG V + + R TG +G+ FV+F DPA A M+ YL
Sbjct: 42 NLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYL 101
Query: 369 MGKRLIKAAYIPPDKRR 319
+ R + + ++++
Sbjct: 102 LLGRELTVVFAEENRKK 118
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G +P E + + G + R+++ R +G SKGYAFV F VAQ E +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 381 NN 376
++
Sbjct: 178 HS 179
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = -1
Query: 549 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 370
++ H + + + F QFG V + + R TG +G+ F++F DPA A M+ YL
Sbjct: 43 NLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYL 102
Query: 369 MGKRLIKAAYIPPDKRR 319
+ R + + ++++
Sbjct: 103 LLGRELTVVFAEENRKK 119
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++P + +FS+FG + + RV+ R+TGR++ +AF+ F
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN 273
Query: 381 NNYLMGKRLI 352
G+R+I
Sbjct: 274 GTQYEGRRII 283
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ +IP + Q+ F FG V + V R+ +TG S+G +V A+I ++
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 381 NNYLMGKRLIKAAY 340
+ +G R ++ Y
Sbjct: 170 DGTEVGGREMRVRY 183
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + ++ ++G V + + +G+SKGY VEF+DP A + +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 381 NNYLMGKRLIKAAYIPP 331
N Y R Y P
Sbjct: 296 NGYPFNGRPCVVEYASP 312
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 385
+++G IP + + ++F QFG + +++R TGRS+G+ FV + + V ++A+
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKG 191
Query: 384 MNNYLMGKRL-IKAA 343
L G ++ IK A
Sbjct: 192 NRIELSGTQVEIKKA 206
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 385
+++G + G + + Q F+ FG V+ VI R TGRS+G+ FV F + + + E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 384 MNNYLMGKRL 355
L G+++
Sbjct: 97 DGKELNGRQI 106
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 385
+++G + G + + Q F+ FG V+ VI R TGRS+G+ FV F + + + E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 384 MNNYLMGKRL 355
L G+++
Sbjct: 97 DGKELNGRQI 106
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 385
+++G + H E + + S++G + N R++R TG S+GY FVE+ + + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 384 MNNYLMGKRLI 352
++ + G+ +I
Sbjct: 126 HHSLIDGREII 136
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G + ++ M +F ++G + +I + T RSKGY FV F D A E
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDS 78
Query: 381 NNYLMGKR 358
+ G+R
Sbjct: 79 TPIINGRR 86
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
+++G++ + +YF QFG V + V+ GRSKGY F+ F D
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRD 62
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G+IP Q+T+ + G V +V+ + +GRS+ + F A V E +
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 381 NNYLMGKRLIK 349
N + R IK
Sbjct: 138 NGNTVEGREIK 148
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++ + + FS+ G V + +V R T +S G+ FV F + +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 381 NNYLMGKRLIK 349
NN L+ + I+
Sbjct: 239 NNSLLEGQKIR 249
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/83 (26%), Positives = 44/83 (53%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ + ++ + F++FG +++C+V+R +G SKG FV F + A V M
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 381 NNYLMGKRLIKAAYIPPDKRRWA 313
N ++G + + A + R A
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRA 411
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G + + Q+ YF++ V + RV R T S GY +V + + A+ + +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 381 N-NYLMGKRLIKAAYIPPD 328
N +YL GK +I+ Y D
Sbjct: 108 NYSYLNGK-MIRITYSSRD 125
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+ ++ + ++ F Q+G +S+ V+R G+S+ + FV F +P A E +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 381 N 379
N
Sbjct: 286 N 286
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++ ++ + + FS G + +C+V G+S+GY FV+F A+ E
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIE 192
Query: 387 TMNNYLMG-KRLIKAAYIPPDKRRWA 313
+N ++ K++ ++ ++R A
Sbjct: 193 KLNGKVLNDKQIFVGPFLRKEERESA 218
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 385
+++G I E + QYFS++G V V + + TG+ +G+ FV F +D V + + +T
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 384 MNNYLMGK 361
++++GK
Sbjct: 68 --HFILGK 73
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + E + YF +FG ++ V+ T R +G+ FV + ++V ++
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSN 181
Query: 381 NNYLMGKRLIKAAYIPPD 328
+ L KR+ IP +
Sbjct: 182 FHELSDKRVEVKRAIPKE 199
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G + + Q+ + F+Q G V + RV R T RS GY +V + P A +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 381 NNYLMGKRLIKAAY 340
N + R I+ Y
Sbjct: 107 NFMALNGRAIRVMY 120
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/116 (25%), Positives = 54/116 (46%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++ ++ + + FS FG + +C+V +G+SKGY FV++ AQ +
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAID 191
Query: 387 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSDAE 220
+N L+ K Y+ P + + +P V TN+ +K ++ SD E
Sbjct: 192 KLNGMLLND---KQVYVGP----FVHKLQRDPSGEKVKFTNVYVKNLSESL-SDEE 239
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+ ++ + ++ + F +FG ++C ++R G+SKG+ FV F + A + +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 381 N 379
N
Sbjct: 285 N 285
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++G + YF +FG V + ++ R TG +G+ FV F D AVA+ V E
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+++G +P E ++ YF +G + +++ TGRS+G+ FV F
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF 205
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ +P + YF +FG + +V+ T RSKG+ FV F + A E
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 381 NNYLMGKRL-IKAAYI 337
N+ + G+ + K AY+
Sbjct: 71 NHTIDGRTVNCKLAYL 86
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P E ++ YF Q G V +I+ +RTG+ +G FV++ A +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 381 NNYL 370
+N +
Sbjct: 182 HNQI 185
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G +P E ++ YF Q G V +I+ +RTG+ +G FV++ A +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 381 NNYL 370
+N +
Sbjct: 182 HNQI 185
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + H E + FS VS+ +VIR+++T +S+GY FVEF + A+ ++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 381 NNYLM 367
+ M
Sbjct: 181 SGVTM 185
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFS-QFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
+++G + + + + F+ ++ V +V+ TGRSKGY FV F D
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 384 MNNYLMGKRLIKAAYIPPDK 325
MN R ++ P +
Sbjct: 275 MNGAFCSSRQMRVGIATPKR 294
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + E + Q FS FG V + ++ KG FV+F + A+ +
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGKGCGFVQFANRQSAEEAIGNL 382
Query: 381 NNYLMGKRLIKAAYIPPDKRRW 316
N ++GK ++ ++ ++W
Sbjct: 383 NGTVIGKNTVRLSWGRSPNKQW 404
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ + + F FG + +C+V+ G+SKG+ FV+F A +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 381 NNYLM-GKRLIKAAYIPPDKR 322
+ ++ GK+L A +I D+R
Sbjct: 172 HGSMVYGKKLFVAKFINKDER 192
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ E ++ + F +G + + +V+ GRSKG+ FV F + ++ +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVM-CHENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 381 NNYLM-GKRLI 352
N +L+ GK ++
Sbjct: 365 NGFLVDGKPIV 375
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +Y+G + E + FS V + + R+ TG+S YA++ F P A
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 387 TMNNY-LMGKRL 355
+N+ L GK +
Sbjct: 81 RLNHSDLKGKAM 92
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + E + FS FG V+ R+ + +GRS+G+ FV+F + A + M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 381 NNY-LMGKRL 355
+ L+G+ L
Sbjct: 103 DGKGLLGRPL 112
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + + FS + S+ RV+ ++TGRS+G+ FV F + AQ + +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 381 NNYLMGKRLIK 349
+G R I+
Sbjct: 201 TGKWLGSRQIR 211
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G+I E + + F+ G V +C++IR ++ Y FV + D A + ++
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAILSL 111
Query: 381 N-NYLMGK 361
N +L G+
Sbjct: 112 NGRHLFGQ 119
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++ + + + FS +G V + V+R R T RS+G+ FV + + A+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 381 N-NYLMGKRL 355
+ L G+R+
Sbjct: 65 DGKELNGRRV 74
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 352
+ + Q FS FG + R+IR T R KG+ F+ F A+ ++++ ++ RLI
Sbjct: 20 DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLI 78
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 328
FS+FG V + VIR +TG S YAF+EF + + M+N L+ R I +
Sbjct: 263 FSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFSQSV 322
Query: 327 KRRWA 313
+ W+
Sbjct: 323 SKLWS 327
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
E +T F FG + N + RR+G KGYA +E+ AQ MN
Sbjct: 108 EEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMN 157
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 418
G V++ ++ Q+ FS FG V +C+V R +G SKGY FV+F+
Sbjct: 31 GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFY 79
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ ++ + FS+FG +++C+V+ G SKG FVEF A M
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVM-VHSNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 381 NNYLMGKRLI 352
N ++G + I
Sbjct: 284 NGKMVGNKPI 293
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
V+ +P E + ++FS+ G V + R+I R + RSKG ++EF+D
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+Y+G++ E Q+ Q F FG V ++ TG+ KG+ F++F
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -1
Query: 519 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 340
+ + F FG V+ C V ++T S+G+ FV F AQ +N Y +++ +
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249
Query: 339 IPP 331
P
Sbjct: 250 STP 252
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G I + + + FS+FG + + R +R R+T AF+++++ A + A++M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT------AFIDYYEMDDA-LQAKSM 304
Query: 381 NNYLMGKRLIKAAYI---PPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSDAE 220
N MG ++ ++ P K +WA Y N +N + Y K D +
Sbjct: 305 NGKPMGGSFLRVDFLRSQAPKKEQWAGSY---DNRNGNMNHKPQYPHSYEDFKGDVQ 358
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI- 352
E +TQ FSQ+G V VI + R KG+A+V F A+ +N L+ R++
Sbjct: 34 EETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVI 93
Query: 351 ----KAA-YIPPDKR 322
KAA + PPD +
Sbjct: 94 LDTTKAAKHNPPDTK 108
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLIKAAYIPP 331
F+ FG + + RVI R +GRSKG+ FV + A+ MN +L G + P
Sbjct: 54 FASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR 113
Query: 330 DKRRWAMRYTWNPQNNPVLNTN 265
+ RR + P + TN
Sbjct: 114 EPRRPLQQEPLRPSSESGFTTN 135
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
E +T FS+FG V + ++I R TG+S+ + FV F +
Sbjct: 20 EKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G + + +IP ++ + F +FG V + + R +G+ +G+AFVEF D A
Sbjct: 47 GSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQR 106
Query: 387 TMNNYLMGKRLIKAAYIPPDKRR 319
+MN R I ++R
Sbjct: 107 SMNRRSFAGREITVVVASESRKR 129
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 361
E + ++FS+ G V + R+I R + RS+G +VEF+D + L+G+
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQ 250
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+Y+G++ E + + F FG V +V R TG KG+ FV+F
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQF 332
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G++ + F + G V RV+ TGRS+GY FV + A + E++
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 381 NNYLMGKRLIK 349
+ + + R I+
Sbjct: 239 DGFELEGRAIR 249
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y G++P+ + Q F V+ +R TG+S+G+AFV + I+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 381 NNYLMGKRLIKAAYIPPDK 325
+ R +K + K
Sbjct: 147 DGTEYLGRALKVNFADKPK 165
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSN----CRVIRSRRTGRSKGYAFVEFHDPAVAQIV 394
+++G + + + FS F S+ RV+ ++TGRS+G+ FV F + AQ
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 393 AETMNNYLMGKRLIK 349
MN + R I+
Sbjct: 210 INEMNGKWVSSRQIR 224
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY G+I E + + F+ G + +C++IR ++ Y FV + D A + T+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCASMAIMTL 120
Query: 381 N 379
N
Sbjct: 121 N 121
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
+++G + ++ + + FS+ + V +V+ TGRSKGY FV F D
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 384 MNNYLMGKRLIKAAYIPPDK 325
MN R ++ P K
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGG--VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
+++G + H E + F+ + + +VIR++ G S+GY FVEF VA V
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 387 TMNNYLM 367
N M
Sbjct: 163 EFNGTTM 169
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
+++G + ++ + + FS+ + V +V+ TGRSKGY FV F D
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 384 MNNYLMGKRLIKAAYIPPDK 325
MN R ++ P K
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGG--VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
+++G + H E + F+ + + +VIR++ G S+GY FVEF VA V
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 387 TMNNYLM 367
N M
Sbjct: 163 EFNGTTM 169
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/74 (20%), Positives = 38/74 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + + Q F++FG + + ++ KG FV+F + A+ E +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 359
Query: 381 NNYLMGKRLIKAAY 340
N ++GK+ ++ ++
Sbjct: 360 NGTVIGKQTVRLSW 373
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 349
E + + F FG V+ V ++TG S+G+ FV F AQ +N Y +++
Sbjct: 226 EPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILR 285
Query: 348 AAYIPP 331
+ P
Sbjct: 286 VEWATP 291
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFG--------GVSNCRVIRSRRTGRSKGYAFVEFHDP 412
G VY+ ++P G E+ + YF G G + R + T KG A V + DP
Sbjct: 8 GSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDP 67
Query: 411 AVAQIVAETMNN 376
A E NN
Sbjct: 68 HAALAAVEWFNN 79
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 328
F+QFG V++ +V+ R +G SKG+ FV + + M+ + +I A Y P
Sbjct: 76 FAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPR 135
Query: 327 KRRWAMRYTWNPQNN 283
++ ++ PQNN
Sbjct: 136 EQ----SQSYQPQNN 146
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
F +G + C V+ + TGR KGY FV F
Sbjct: 428 FESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
+++G + + + + FS+ + V +V+ TGRSKGY FV F D
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 384 MNNYLMGKRLIKAAYIPPDK 325
MN R ++ P K
Sbjct: 261 MNGVKCSSRAMRIGPATPRK 280
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 489 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
+ + +VIR++ G S+GY FVEF VA V + N
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/74 (21%), Positives = 38/74 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + + Q FS+FG + + ++ KG FV+F + A+ E +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 361
Query: 381 NNYLMGKRLIKAAY 340
N ++GK+ ++ ++
Sbjct: 362 NGTVIGKQTVRLSW 375
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++P E ++ FS++G V I + R GYAFVEF D A+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 381 NNY 373
+ Y
Sbjct: 66 DGY 68
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++P E ++ FS++G V I + R GYAFVEF D A+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 381 NNY 373
+ Y
Sbjct: 66 DGY 68
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++P E ++ FS++G V I + R GYAFVEF D A+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 381 NNY 373
+ Y
Sbjct: 66 DGY 68
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRL 355
E + ++F GGV + R++ + TG+ +G A+ +F D +A +A+ + GK++
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMF-FGKKI 721
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRL 355
E + ++F GGV + R++ + TG+ +G A+ +F D +A +A+ + GK++
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMF-FGKKI 721
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++ + + Q G V + + R + T + KG+AF E+ +A +
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 381 NNYL-MGKRLIKAAYIPPDK 325
+ + + R +K A DK
Sbjct: 69 SGLVSLYNRTLKFAISGQDK 88
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V + +P+ Q+ + FS+ G V C ++ ++ + +G+AFV+F E
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 381 NNYLMGKRLI---KAAYIPPDKRR 319
N +G R I +AA+ P + R
Sbjct: 82 NGSTVGGRRITVKQAAHRPSLQER 105
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 331
FS G V + + ++ TG KG+AFV+F A + N ++ GKR I + P
Sbjct: 351 FSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVP 409
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G++ + ++ Q+F G V ++ + G+ KG+A+VEF + Q +
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQEALQLN 152
Query: 381 NNYLMGKRL 355
+ L G++L
Sbjct: 153 ESELHGRQL 161
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
+Y+G++P E ++ FS++G V I + R GYAFVEF D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKIPPRPPGYAFVEFED 54
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
+Y+G++P E ++ FS++G V I + R GYAFVEF D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKIPPRPPGYAFVEFED 54
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
E + Q +++G + + RVIR + +G S+G+AF++F
Sbjct: 311 EEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = -1
Query: 528 EHQMTQY-FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK--R 358
+ +M +Y FS+ + + R++R + T S+G+AFV F+ A E N + + +
Sbjct: 470 DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGK 529
Query: 357 LIKAAY 340
+++ AY
Sbjct: 530 ILRVAY 535
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G + + + F FG + + V+ R +G S+G+ FV + VA + M
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 381 NNYLMGKRLI 352
N + R+I
Sbjct: 98 QNKELDGRII 107
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++ + ++ +F G V+ ++ + G+ KG+A+VEF + Q +
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 381 NNYLMGKRL 355
+ L G++L
Sbjct: 150 ESELHGRQL 158
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++ + ++ +F G V+ ++ + G+ KG+A+VEF + Q +
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 381 NNYLMGKRL 355
+ L G++L
Sbjct: 150 ESELHGRQL 158
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 34.3 bits (75), Expect = 0.076
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G++ E + + FS +++ R+ +++ TG KGYA V+F D I +
Sbjct: 264 VYIGNLAWDTTERDIRKLFSDCV-INSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLD 322
Query: 381 NNYLMGK 361
+ G+
Sbjct: 323 QQVICGR 329
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+++G++PHG E ++ F +FG + + + + GRS YAFV F+ A E++
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL----AFQPGRS--YAFVNFNHDEDAFAAIESL 78
Query: 381 NNYLMGKRLIKAAYIPPDK 325
+ + ++ + +K
Sbjct: 79 QGFPLSGNPLRIEFAKAEK 97
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ + FS FG V+ V++ R T +S+G AFV + A A +M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 381 N-NYLMGKRL 355
+ L G++L
Sbjct: 119 DAKILNGRKL 128
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 340
F+++G V + + R RRTG S+G+AFV + A E ++ ++ R I +
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 340
F+++G V + + R RRTG S+G+AFV + A E ++ ++ R I +
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 400
+Y+G++ + ++ Q+F G V+ ++ + G+ KG+A+VEF + Q
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQ 157
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ E + FS FG V + + R G S+G+AF+EF A M
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAGRAMLHM 77
Query: 381 NNYLMGKRLI 352
+ L+G++++
Sbjct: 78 DGRLIGQKIL 87
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.13
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 519 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 427
+ + F Q+G + +C+ + + +G+SKGY F+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ ++ +FS+FG + + + TGR KG+ + A+ E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 381 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ--NNPVLNTN 265
+ G L I K ++ NP NNP N
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRN 347
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.13
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 519 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 427
+ + F Q+G + +C+ + + +G+SKGY F+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ ++ +FS+FG + + + TGR KG+ + A+ E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 381 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ--NNPVLNTN 265
+ G L I K ++ NP NNP N
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRN 347
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.13
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 519 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 427
+ + F Q+G + +C+ + + +G+SKGY F+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ ++ +FS+FG + + + TGR KG+ + A+ E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 381 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ--NNPVLNTN 265
+ G L I K ++ NP NNP N
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRN 347
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 352
E + F FG + ++I + + RSKGYAF+E+ A + MN ++ +I
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMI 353
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
F Q+G + +C+ + + +G+SKGY F+ F
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILF 176
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYA 433
+Y+ ++ ++ ++FS+FG + + + TGR KG+A
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFA 271
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
F +G ++ C V+ + TGR+KG+ FV F
Sbjct: 183 FEVYGEITECSVVMDKDTGRAKGFGFVLF 211
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G + E + + F Q G V N V + R T + Y F+E+ A + +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 381 NNYLMGKRLIKAAYIPPDKR 322
N + + I+ DK+
Sbjct: 87 NMIKLHGKPIRVNKASQDKK 106
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+ ++ + + F ++G +++ V++ G+SKG+ FV F + A E++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 89
Query: 381 NNY 373
N +
Sbjct: 90 NGH 92
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
++ G++ + + +F + G V + R + S G KGY +EF P AQ E
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVR-LSSFDDGSFKGYGHIEFASPEEAQKALEMN 444
Query: 381 NNYLMGK 361
L+G+
Sbjct: 445 GKLLLGR 451
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 522 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVE 424
++ +FS+ G V+ V R TG S+G+A+++
Sbjct: 498 ELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = -1
Query: 564 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
++++ + E + + F FG V + + R +G+ +VEF A A+
Sbjct: 99 VLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLY 158
Query: 384 MNNYLMGKRLIKAAYIPPDKRR 319
M+ + +++KA + P +++
Sbjct: 159 MDGAQIDGKVVKATFTLPPRQK 180
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = -1
Query: 564 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
++++ + E + + F FG V + + R +G+ +VEF A A+
Sbjct: 99 VLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLY 158
Query: 384 MNNYLMGKRLIKAAYIPPDKRR 319
M+ + +++KA + P +++
Sbjct: 159 MDGAQIDGKVVKATFTLPPRQK 180
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRV-IRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
VY+ ++P ++ + F FG + V +R+R+ YAFVEF D + +
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
Query: 384 MNNYLMGKRL 355
YL G+++
Sbjct: 319 SPIYLGGRQV 328
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRV-IRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
VY+ ++P ++ + F FG + V +R+R+ YAFVEF D + +
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
Query: 384 MNNYLMGKRL 355
YL G+++
Sbjct: 378 SPIYLGGRQV 387
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++ +G + + FS+ G + I R+GRSKG A V F A +
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYG-IHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 381 NNYLMGKRLIK 349
NN + +L+K
Sbjct: 169 NNVQLDGKLMK 179
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
FS +G + VI + TG+SKGY FV F
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++P ++ +F +G V + + TG+S+G+A + AQ
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 381 NNYLMGKRL 355
+ GK L
Sbjct: 229 VKVIDGKHL 237
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
FS +G + VI + TG+SKGY FV F
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ ++P ++ +F +G V + + TG+S+G+A + AQ
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 381 NNYLMGKRL 355
+ GK L
Sbjct: 229 VKVIDGKHL 237
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+++ ++ G + ++++F++FG V ++ TG+ G A++EF
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 519 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPA 409
+++YFS FG ++ V S TG S GYA+++ + A
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGA 290
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
++ + ++FS G + N V R TG SKG A++EF +
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 510 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 355
+F + G V + R +R G +G+ VEF AQ E L+G+ +
Sbjct: 316 FFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREI 367
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
+Y+ H+P + F QFG ++N + + G Y FVEF + A E
Sbjct: 321 IYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIE 378
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 400
VY+G++ E ++ F FG V + V R R GYAF++F DP A+
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVAR-----RPPGYAFLDFEDPRDAR 52
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+++ +P + F +G + C V+ + TG++KG+ FV F
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+++ +P + F +G + C V+ + TG++KG+ FV F
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 412
+Y+G++P + ++ F ++G + + I + R GYAFVEF DP
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVD---IDLKIPPRPPGYAFVEFEDP 55
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 477 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 352
R+I+ ++T R KG+ F+ F AQ + +N ++ RLI
Sbjct: 96 RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/76 (21%), Positives = 37/76 (48%)
Frame = -1
Query: 549 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 370
++P + + F +FG + + + R+ TG +G+ FV++ A + MN+ +
Sbjct: 53 NLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112
Query: 369 MGKRLIKAAYIPPDKR 322
+G R I + +++
Sbjct: 113 IGGREIAIVFAEENRK 128
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.5 bits (68), Expect = 0.53
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -1
Query: 510 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLI----KA 346
+F+ G V + R+I S + + GY FVEF P +A + E N YL ++ K
Sbjct: 701 FFNDVGEVVSVRLIVSPES-KHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT 759
Query: 345 AYIPP 331
A PP
Sbjct: 760 APYPP 764
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.5 bits (68), Expect = 0.53
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -1
Query: 549 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY- 373
H+P G +++ FSQ+G +R G+ + AFV+F + A A +N
Sbjct: 34 HLPDGIPHDIVSRLFSQYG----ASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 372 LMGKRL-IKAAYIPPDKRR 319
+GK L ++ A P D ++
Sbjct: 90 FLGKVLQVQRANKPNDNKK 108
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 31.1 bits (67), Expect = 0.71
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+++ + + E ++ + F +G + ++ + T + KGYAF+E+
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = -1
Query: 558 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 379
++G + + + F ++G + +V+ + +GRS+G+ F+ F + MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 378 NYLMGKRLI 352
+ R I
Sbjct: 70 GMDLDGRTI 78
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+ + E + F QFG + + ++ + R KG+AF+ + A + M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 381 NNYLMGKRLI 352
+ + R+I
Sbjct: 139 HGKFLDGRVI 148
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
VY+G++ E ++ F FG + N V R R GYAF+EF D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR-----RPPGYAFLEFDD 47
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
VY+G++ E ++ F FG + N V R R GYAF+EF D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR-----RPPGYAFLEFDD 47
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 456 TGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD-KRRWAMRYTWN-PQNN 283
T + GY F+EF+ P AQ E + Y + K I A + D R ++ W PQ
Sbjct: 102 TKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQER 161
Query: 282 P 280
P
Sbjct: 162 P 162
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 456 TGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD-KRRWAMRYTWNP 292
T + GY F+EF+ P AQ E + Y + K I A + D R ++ W P
Sbjct: 101 TKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEP 156
>At5g18700.1 68418.m02219 protein kinase-related contains protein
kinase domain, INTERPRO:IPR000719
Length = 1366
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 414 PAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQY 244
P++ I+ E L GK L+ A++ + RRW + N + PV++ K K Y
Sbjct: 842 PSLLSII-EQGTEVLRGKALLFVAFLCKNSRRWLTNFFCNARFLPVVDRLAKEKDSY 897
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/75 (21%), Positives = 35/75 (46%)
Frame = -1
Query: 564 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 385
++Y+ ++P +M F ++G + R+ + T KG AFV + D A+ +
Sbjct: 20 VLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYDAKNAVDH 76
Query: 384 MNNYLMGKRLIKAAY 340
++ + + R + Y
Sbjct: 77 LSGFNVANRYLIVLY 91
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
+Y+G++P EH++ F ++G + + I + R Y FVEF A+ +
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVD---IELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 381 NNY-LMGKRL 355
+ Y L G RL
Sbjct: 66 DGYNLDGCRL 75
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+G+ + + + FS+FG R +R GYAFV F D A+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFG--------RVKRVDMKSGYAFVYFEDERDAEDAIRRT 55
Query: 381 NNYLMG 364
+N G
Sbjct: 56 DNTTFG 61
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 415
VY+G++ E ++ F FG + + V R R GYAF++F D
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVAR-----RPPGYAFLDFED 47
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 421
+++ +IP F + ++ F FG V + +V + TG SK + + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 358
+ + +F++ G V++C ++ RT S+G+AFV A+ + +N ++ R
Sbjct: 85 DKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = -1
Query: 528 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 358
+ + +F++ G V++C ++ RT S+G+AFV A+ + +N ++ R
Sbjct: 84 DKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
VY+ I E Q+ F FG V +CR+ + +AF+EF D A+ A +
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNS--VLRFAFIEFTDEVGAR-TALNL 208
Query: 381 NNYLMG 364
+ ++G
Sbjct: 209 SGTMLG 214
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 507 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 349
F F G++ V+ + G+ G AFV F P +I + + + MG+R ++
Sbjct: 100 FEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQ-RDRHNMGRRYVE 151
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/80 (20%), Positives = 34/80 (42%)
Frame = -1
Query: 567 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 388
G +++ ++ ++ FS +G + R RT ++EF D A++ +
Sbjct: 295 GALWVNNLDSSISNEELHGIFSSYGEIREVR-----RTMHENSQVYIEFFDVRKAKVALQ 349
Query: 387 TMNNYLMGKRLIKAAYIPPD 328
+N + R +K A P+
Sbjct: 350 GLNGLEVAGRQLKLAPTCPE 369
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 604 TRRENKKKETCKRACLFGTYPTWIL*ASNDTILQS 500
TRR+ KE + C+ PTW L +N+T L S
Sbjct: 37 TRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHS 71
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 534 FYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKR 358
F EH ++ YF+ +G V + R+ ++ + Y FV F V I+A+ +++ R
Sbjct: 329 FTEHDVSIYFTSYGHVEDVRIPCQQK----RMYGFVTFASSETVKHILAKGNPHFICNAR 384
Query: 357 LIKAAY 340
++ Y
Sbjct: 385 VLVKPY 390
>At1g11000.1 68414.m01263 seven transmembrane MLO family protein /
MLO-like protein 4 (MLO4) identical to membrane protein
Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 573
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 279 QDCSEGSMCISWPIFVYQVVC 341
+D G + ISWP++VY +VC
Sbjct: 269 EDEFHGIVGISWPLWVYAIVC 289
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIV--AE 388
+++ H+ + +F G V + R+I + TG+ G AFVEF A++V E
Sbjct: 361 LFVAHLSRKTEITHIINFFKDVGEVVHVRLILNH-TGKHVGCAFVEFGSANEAKMVRALE 419
Query: 387 TMN 379
T N
Sbjct: 420 TKN 422
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/112 (21%), Positives = 43/112 (38%)
Frame = -1
Query: 561 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 382
V++G+ + + + + F ++G V R GYAFV F D A+ +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVD--------RVDMKSGYAFVYFEDERDAEDAIRKL 55
Query: 381 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSD 226
+N+ G + + WA P+ + +NLK K + D
Sbjct: 56 DNFPFGYEKRRLSV------EWAKGERGRPRGDAKAPSNLKPTKTLFVINFD 101
>At2g22460.1 68415.m02663 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 245
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 273 NTNLKLKKQYNAVKSDAEELRSA 205
NTNL+ KK YN +KS RS+
Sbjct: 55 NTNLRGKKLYNDIKSRTSSFRSS 77
>At1g33940.1 68414.m04206 hypothetical protein
Length = 497
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 414 PAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQY 244
P++ I+ E L GK + A++ + RRW + N + PV++ K K Y
Sbjct: 139 PSLLSII-EQGTEVLRGKAPLFVAFLCKNSRRWLTNFFCNARFLPVVDRLAKEKDSY 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,519
Number of Sequences: 28952
Number of extensions: 206880
Number of successful extensions: 774
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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