Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e02f
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 91 4e-19
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 60 1e-09
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 60 1e-09
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 57 8e-09
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 57 1e-08
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 57 1e-08
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 57 1e-08
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 54 9e-08
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 53 1e-07
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 53 1e-07
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 53 1e-07
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 53 1e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 53 1e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 52 3e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 52 3e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 52 4e-07
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 52 4e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 51 5e-07
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 48 4e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 48 4e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 48 6e-06
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 48 6e-06
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 48 6e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 48 6e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 47 8e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 47 8e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 47 8e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 47 8e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 47 1e-05
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 46 2e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 46 2e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 46 2e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 46 2e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 46 2e-05
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 46 2e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 2e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 45 3e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 3e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 3e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 45 3e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 4e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 4e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 45 4e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 44 6e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 44 6e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 44 6e-05
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 44 6e-05
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 44 6e-05
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 44 6e-05
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 44 8e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 8e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 44 1e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 1e-04
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 43 1e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 43 1e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 43 1e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 1e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 2e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 42 2e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 42 2e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 42 2e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 42 3e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 41 5e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 41 5e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 5e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 5e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.001
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 40 0.001
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 40 0.001
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 0.001
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 40 0.001
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 40 0.002
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 39 0.002
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 39 0.002
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.005
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 38 0.007
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.007
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.007
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 37 0.009
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 37 0.009
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.011
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 37 0.011
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 37 0.011
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 37 0.011
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 37 0.011
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 37 0.011
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.020
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 36 0.020
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.026
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 36 0.026
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.026
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.026
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.026
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.026
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 35 0.035
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 35 0.035
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.035
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 35 0.035
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 35 0.046
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.046
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.046
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.046
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 35 0.046
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 34 0.061
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 34 0.061
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 34 0.061
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 34 0.081
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 34 0.081
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 33 0.11
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 33 0.11
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.11
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.11
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.11
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.11
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.11
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.11
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 33 0.11
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.11
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.11
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.14
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.14
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.14
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.14
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 33 0.19
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 33 0.19
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 33 0.19
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.19
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.19
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 33 0.19
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 33 0.19
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.19
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 32 0.25
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 32 0.25
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 32 0.25
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 32 0.25
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 32 0.25
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 32 0.33
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 31 0.43
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.43
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 31 0.43
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 31 0.57
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 31 0.57
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 31 0.57
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.57
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.57
At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10) s... 31 0.57
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 31 0.75
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 30 1.00
At5g18700.1 68418.m02219 protein kinase-related contains protein... 30 1.00
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 30 1.00
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 1.00
At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein ... 29 1.7
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 1.7
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 2.3
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 3.0
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 4.0
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 4.0
At4g10610.1 68417.m01735 RNA-binding protein, putative 28 4.0
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 28 5.3
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 28 5.3
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 28 5.3
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 28 5.3
At1g11000.1 68414.m01263 seven transmembrane MLO family protein ... 28 5.3
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 7.0
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 27 7.0
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 27 7.0
At2g22460.1 68415.m02663 expressed protein contains Pfam profile... 27 7.0
At1g33940.1 68414.m04206 hypothetical protein 27 7.0
At4g27100.1 68417.m03895 RabGAP/TBC domain-containing protein si... 27 9.3
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 91.5 bits (217), Expect = 4e-19
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++Y+G IPHGFYE ++ +FSQFG V RV R+++TG+SK + F++F DP VA+I A
Sbjct: 61 VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120
Query: 405 MNNYLMGKRLIKAAYIPPD 461
MN+YL+ + ++K I P+
Sbjct: 121 MNDYLLMEHMLKVHVIEPE 139
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 59.7 bits (138), Expect = 1e-09
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E ++ +YFS FG V +++ R TGR++G+ FV F DPAVA+IV
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 402 TMNNYLMGKRLIKA-AYIPPDKRRWAMR 482
+N + RL++A +P D + R
Sbjct: 66 EKHN--IDGRLVEAKKAVPRDDQNMVNR 91
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G +P E YF QFG ++ V+ T R +G+ F+ + + AV +++ +T
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 405 MNNYLMGKRLIKAAYIPPD 461
+ L GK + +P +
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 59.7 bits (138), Expect = 1e-09
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E ++ +YFS FG V +++ R TGR++G+ FV F DPAVA+IV
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 402 TMNNYLMGKRLIKA-AYIPPDKRRWAMR 482
+N + RL++A +P D + R
Sbjct: 66 EKHN--IDGRLVEAKKAVPRDDQNMVNR 91
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G +P E YF QFG ++ V+ T R +G+ F+ + + AV +++ +T
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 405 MNNYLMGKRLIKAAYIPPD 461
+ L GK + +P +
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ F E Q+ + FG + +++ R TG SKGYAF + DP+V I +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 408 NNYLMGKRLI 437
N MG + +
Sbjct: 437 NGIKMGDKTL 446
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ F E Q+ + FGG+ +++ R TG SKGYAF + D +V I +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 408 NNYLMGKRLI 437
N MG + +
Sbjct: 421 NGIKMGDKTL 430
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ F E Q+ + FGG+ +++ R TG SKGYAF + D +V I +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 408 NNYLMGKRLI 437
N MG + +
Sbjct: 421 NGIKMGDKTL 430
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ F E Q+ + FGG+ +++ R TG SKGYAF + D +V I +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 408 NNYLMGKRLI 437
N MG + +
Sbjct: 421 NGIKMGDKTL 430
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 53.6 bits (123), Expect = 9e-08
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G IP E + FSQ+G + + +IR + TG+SKG+AF+ + D + + +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 408 NNYLMGKRLIK 440
N L+ R IK
Sbjct: 98 NGALVLGRTIK 108
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E ++ YFS +G V ++R R TGR++G+ F+ F DP V++ V
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-- 63
Query: 402 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 485
M+ +++ R ++A +P D ++ R+
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 92
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G +P E + YF QFG +++ V+ T R +G+ F+ F D AV +++ +T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 405 MNNYLMGKRLIKAAYIPPD 461
+ L GK + +P +
Sbjct: 172 FHE-LNGKLVEVKRAVPKE 189
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E ++ YFS +G V ++R R TGR++G+ F+ F DP V++ V
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-- 63
Query: 402 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 485
M+ +++ R ++A +P D ++ R+
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 92
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G +P E + YF QFG +++ V+ T R +G+ F+ F D AV +++ +T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 405 MNNYLMGKRLIKAAYIPPD 461
+ L GK + +P +
Sbjct: 172 FHE-LNGKLVEVKRAVPKE 189
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E ++ YFS +G V ++R R TGR++G+ F+ F DP V++ V
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-- 63
Query: 402 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 485
M+ +++ R ++A +P D ++ R+
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 92
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G +P E + YF QFG +++ V+ T R +G+ F+ F D AV +++ +T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 405 MNNYLMGKRLIKAAYIPPD 461
+ L GK + +P +
Sbjct: 172 FHE-LNGKLVEVKRAVPKE 189
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E ++ +YF ++G + ++R R TGR++G+ F+ F DP+VA+ V
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV-- 72
Query: 402 TMNNYLMGKRLIKA-AYIPPDKRRWAMRY 485
M+ +++ R ++A +P D ++ R+
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRH 101
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P E + YF QFG +++ V+ T R +G+ F+ F +V
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 408 NNYLMGKRLIKAAYIPPD 461
+ L GK + +P +
Sbjct: 184 FHELNGKMVEVKRAVPKE 201
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 53.2 bits (122), Expect = 1e-07
Identities = 32/106 (30%), Positives = 51/106 (48%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E+ + +YFS FG V V+R + TGR +G+ FV F DPAV V +
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 402 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKK 539
++ +K A ++ T+N N N++ KK
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKK 111
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P + YF +G VS+ ++ + T R +G+ FV F +V
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 408 NNYLMGKRLIKAAYIPPD 461
+ L GK++ +P D
Sbjct: 172 FHDLNGKQVEVKRALPKD 189
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G +P + + FS FG + +VI+ R TG SKGY FV++ D +A + M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 408 NNY 416
N Y
Sbjct: 542 NGY 544
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G +P + + FS FG + +VI+ R TG SKGY FV++ D +A + M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 408 NNY 416
N Y
Sbjct: 542 NGY 544
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + M +YF QFG + VI + TGRSKGY FV F + A + M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 408 NNYLMGKR 431
N + G+R
Sbjct: 84 NPVIDGRR 91
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G+IP+ E Q+ + + G V + R++ R TG+ KGY F E+ D A +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 408 NNYLMGKRLIKAAYIPPDK 464
+Y + R ++ + DK
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 51.2 bits (117), Expect = 5e-07
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + G EH + FS F GV+ RV+ ++ TGRS+GY FV F A M
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 408 N 410
N
Sbjct: 93 N 93
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VYLG IP E + + G V+ R++R + +G KGYAFV F +A +T+
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 408 NNY-LMGKRL 434
NN GKR+
Sbjct: 154 NNTDFRGKRI 163
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFG-GVSNCRVIRS-RRTGRSKGYAFVEFHDPAVAQIVAE 401
++LG++P + E + + ++ G GV + + + GR++G+AF+E+++ A A+ +
Sbjct: 174 LFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQ 233
Query: 402 TMNN 413
M+N
Sbjct: 234 KMSN 237
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
++ G + + + +++ F++F + +VIR +RTG++KGY FV F +PA + M
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 408 NNYLMGKRLIK 440
N +G R IK
Sbjct: 199 NGKYVGNRPIK 209
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E+ + F+Q G ++ +VIR++ TG+S+GY F+EF +VA+ V +T
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 408 N 410
N
Sbjct: 122 N 122
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
+++G + ++ ++ F +G V +V+ R TGRSKGY FV F D
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++P Q+ Q F G V VI + TGRS+G+ FV + + A+
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 408 NNY-LMGKRLIKAAYIPPDKR 467
N Y L G+ L A PP KR
Sbjct: 153 NGYELDGRPLRVNAGPPPPKR 173
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ G + + FS+ G V RVI R +GRSKG+ FV + Q +++
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 408 NNY-LMGKRL-IKAAYIPPDKRRW 473
+ L G+++ + A P +R++
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQY 289
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + + Q+F Q+G + VI + TGRSKGY FV F DP A+
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 408 NNYLMGKR 431
+ G+R
Sbjct: 86 TPIIDGRR 93
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
V++G + ++ + YF QFG + VI + +GRSKGY FV F DP AQ
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
V++G + ++ + YF QFG + VI + +GRSKGY FV F DP AQ
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++++G + + ++ SQ+G V + R +G+SKGY VEF+D A A E
Sbjct: 203 MLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEG 262
Query: 405 MNNYLM-GKRLIKAAYIPPDKRRWAMRYTW-NPQNNPVLN 518
MN ++ GK + A P ++ +T N N + N
Sbjct: 263 MNGFIFNGKACVVAFASPETLKQMGANFTGRNQGQNQIQN 302
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I E ++ YF FG V +++ R TGR++G+ FV F DP VA+ V +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-LL 66
Query: 408 NNYLMGKRLIKAAYIPPD 461
+ + GK + +P D
Sbjct: 67 KHIIDGKIVEAKKAVPRD 84
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G + E + +YF+QFG +++ V+ RT R +G+ F+ + + AV +++ +T
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 405 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWN 494
+ L GK + +P D MR N
Sbjct: 168 FHE-LNGKMVEVKLAVPKDMALNTMRNQMN 196
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I E ++ YF FG V +++ R TGR++G+ FV F DP VA+ V +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-LL 66
Query: 408 NNYLMGKRLIKAAYIPPD 461
+ + GK + +P D
Sbjct: 67 KHIIDGKIVEAKKAVPRD 84
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G + E + +YF+QFG +++ V+ RT R +G+ F+ + + AV +++ +T
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 405 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWN 494
+ L GK + +P D MR N
Sbjct: 168 FHE-LNGKMVEVKLAVPKDMALNTMRNQMN 196
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+ + ++P E + + FS FG ++ ++I+ RSKGYAF++F A + ETM
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 408 NNYLMGKRLIKAAYIPPDKR 467
+ + R+I P KR
Sbjct: 102 DRRMYNGRMIYIDIAKPGKR 121
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 47.6 bits (108), Expect = 6e-06
Identities = 21/83 (25%), Positives = 48/83 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+YL ++ + ++ + FS++G V++C+V+ + + G S+G+ FV + +P A + + M
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388
Query: 408 NNYLMGKRLIKAAYIPPDKRRWA 476
N ++G++ + A + R A
Sbjct: 389 NGKMIGRKPLYVALAQRKEERQA 411
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G V++ ++ + + FS FG + +C+V GRSKGY FV+F AQ +
Sbjct: 132 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAID 190
Query: 402 TMNNYLMGKRLI 437
+N L+ + +
Sbjct: 191 KLNGMLLNDKQV 202
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + F+Q V N RV R T RS GYA+V F +P A E++
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 105
Query: 408 N 410
N
Sbjct: 106 N 106
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + E+ +T FSQ G + + +VIR++ TG+ +GY F+EF A A+ +T
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 408 NNYLM 422
N M
Sbjct: 86 NGTQM 90
Score = 36.3 bits (80), Expect = 0.015
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFS-QFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + ++ + + F + V +V+ TGRSKGY FV+F + +
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 405 MNNYLMGKRLIKAAYIPPDK 464
MN R ++ + P K
Sbjct: 178 MNGLYCSTRPMRISAATPKK 197
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+ + ++ E ++ + FSQ G V ++ +KGY +V+F A+ + M
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGYGYVQFKTRPSAEEAVQRM 292
Query: 408 NNYLMGKRLIKAAYIP-PDKRRWAMRYTWNPQN 503
++G++ ++ ++ P + W + N N
Sbjct: 293 QGQVIGQQAVRISWSKNPGQDGWVTQADPNQWN 325
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 411 NYLMGKRLI 437
+ R+I
Sbjct: 69 GKELDGRVI 77
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 411 NYLMGKRLI 437
+ R+I
Sbjct: 69 GKELDGRVI 77
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 411 NYLMGKRLI 437
+ R+I
Sbjct: 69 GKELDGRVI 77
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + E + + F+++G V + RVI R TGRS+G+ FV F A + +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 408 NNYLMGKRLIKAAY 449
+ + R++K Y
Sbjct: 102 DGRDLHGRVVKVNY 115
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 440
E ++ + FS+FG V+N ++I + RT +S GY +V F+ AQ E MN R I
Sbjct: 90 EGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFIL 149
Query: 441 AAYIPPDKRR 470
+ P R
Sbjct: 150 VKFGQPGLSR 159
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + + ++F Q+G + VI + TGRSKGY FV F DP A+
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 408 NNYLMGKR 431
+ G+R
Sbjct: 86 TPIIDGRR 93
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++P ++ + FS+ G V + RV+ R TGRS+G+ FV+ + + +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 408 NNYLMGKRLIKAAYIPPDKRR 470
+ + R IK RR
Sbjct: 269 DGQNLEGRAIKVNVAEERTRR 289
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + G + + F+ FG V + +VI R TGRS+G+ FV F+D A M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 408 NNYLMGKRLIK 440
+ + R I+
Sbjct: 97 DGKELNGRHIR 107
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + G + + F+ FG V + +VI R TGRS+G+ FV F+D A M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 408 NNYLMGKRLIK 440
+ + R I+
Sbjct: 97 DGKELNGRHIR 107
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/102 (27%), Positives = 46/102 (45%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++ ++ + + FS FG + +C+V TGRSKGY FV+F AQ +
Sbjct: 136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAID 194
Query: 402 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNL 527
+N LM + + + + R T P+ V NL
Sbjct: 195 KLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNL 236
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/68 (25%), Positives = 40/68 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+YL ++ + ++ + FS++G V++ +V+ + + G S+G+ FV + +P A M
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392
Query: 408 NNYLMGKR 431
N ++G++
Sbjct: 393 NGKMIGRK 400
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ ++P E ++ + F +FG +S+ V+R ++G S+ + FV F A E M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 408 NNYLMG 425
N +G
Sbjct: 290 NGISLG 295
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + E+ + F+ G + + +VIR+++TG+ +GY F+EF A A+ V +T
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 408 NN 413
NN
Sbjct: 124 NN 125
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYF-SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + ++ + + F + + V +V+ R TGR+KGY FV F D + QI A T
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES-EQIRAMT 215
Query: 405 MNN 413
N
Sbjct: 216 EMN 218
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + E+ + F+ G + + +VIR+++TG+ +GY F+EF A A+ V +T
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 408 NN 413
NN
Sbjct: 124 NN 125
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYF-SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + ++ + + F + + V +V+ R TGR+KGY FV F D + QI A T
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES-EQIRAMT 215
Query: 405 MNN 413
N
Sbjct: 216 EMN 218
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + + + + FSQFG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 45.6 bits (103), Expect = 2e-05
Identities = 30/115 (26%), Positives = 56/115 (48%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++ ++P+ E ++ ++FS FG +S ++ + T RS+G A++ + P A E
Sbjct: 261 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 320
Query: 402 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSDA 566
++N RL+ +I P K R N +N L K K++ S+A
Sbjct: 321 ELDNSSFQGRLL---HILPAKHRETSDKQVNDTSN--LPKTFKQKREEQRKASEA 370
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+ ++ Q FS FG + + R+ + + G+ GYAFVEF
Sbjct: 682 KRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEF 716
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G I E ++ ++F+ +G VS V+R + TGR +G+ FV F DP+V V +
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G +P + + QYF +G V++ ++ + T R +G+ FV F + AV ++ +T
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 405 MNNYLMGKRLIKAAYIPPD 461
++ L GK++ +P D
Sbjct: 172 FHD-LSGKQVEVKRALPKD 189
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + H E + FS G VS+ +VIR++ T +S+GY FVEF A A+ V +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 408 NNYLM 422
+ +M
Sbjct: 170 SGSVM 174
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/82 (25%), Positives = 41/82 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I + + Q FSQFG V + ++ KG FV+F D A+ E++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI------PVGKGCGFVQFADRKSAEDAIESL 376
Query: 408 NNYLMGKRLIKAAYIPPDKRRW 473
N ++GK ++ ++ ++W
Sbjct: 377 NGTVIGKNTVRLSWGRSPNKQW 398
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFS-QFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
V++G + + + + FS ++ V + +V+ TGRSKGY FV F D
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 405 MNNYLMGKRLIKAAYIPPDK 464
MN R ++ P +
Sbjct: 264 MNGAYCSNRQMRVGIATPKR 283
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + + Q FS F S+ RV+ ++TGRS+G+ FV F + AQ M
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 408 NNYLMGKRLIK 440
N + R I+
Sbjct: 206 NGKWLSSRQIR 216
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
VY+G++P ++ Q FS+ G V RV+ R TGRS+G+ FV D
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++ + + F Q G V VI +R T +S+G+ FV A+ E
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 408 NNYLMGKRLI 437
N Y + RL+
Sbjct: 212 NRYDLNGRLL 221
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++ Q+ Q F G V VI + TGRS+G+ FV A + A+
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 408 NNY-LMGKRLIKAAYIPPDKR 467
N Y G+ L A PP KR
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKR 181
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++ G + + F++ G V RVI R +GRSKG+ FV Q ++
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 408 NNYLMGKRLIKAA 446
N + R I+ +
Sbjct: 311 NGADLDGRQIRVS 323
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++ Q+ Q F G V VI + TGRS+G+ FV A + A+
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 408 NNY-LMGKRLIKAAYIPPDKR 467
N Y G+ L A PP KR
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKR 181
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++ G + + F++ G V RVI R +GRSKG+ FV Q ++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 408 NNYLMGKRLIKAA 446
N + R I+ +
Sbjct: 319 NGADLDGRQIRVS 331
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I + E + + FS++G V + ++I R TGRS+G+AFV F A +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLD 95
Query: 408 NNYLMGKRL 434
L G+R+
Sbjct: 96 GQDLHGRRI 104
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E Q+ F ++G ++ C+++ R TGR +G+ F+ F D A + M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 408 NNYLMGKRLIKAAYIPP 458
+ +G ++I P
Sbjct: 74 HGRELGNKVISVNKAEP 90
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E Q+ F ++G ++ C+++ R TGR +G+ F+ F D A + M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 408 NNYLMGKRLIKAAYIPP 458
+ +G ++I P
Sbjct: 74 HGRELGNKVISVNKAEP 90
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + +M +YF QFG + +I + TG+SKGY FV F D A
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 408 NNYLMGKR 431
N + G++
Sbjct: 79 NPVIDGRK 86
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + + + FS+FG + +C+++ R TGRS+G+ F+ F D M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 408 NNYLMGKRLIKAAYIPP 458
+ G R+I P
Sbjct: 69 HGRDFGDRVISVNRAEP 85
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
V++G + +H +T+ F + V +V+ R TGRSKGY FV F D + QI A T
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES-EQIRAMT 233
Query: 405 MNN 413
N
Sbjct: 234 EMN 236
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E+ + F G + +VIR+++ G S+GY F+EF + A A+ +T
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 408 N 410
N
Sbjct: 142 N 142
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 44.4 bits (100), Expect = 6e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + E + + F++FG V + ++I R TGRSKG+ FV F D + + MN
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 411 NYLMGKRLIKA 443
+ R I A
Sbjct: 107 GQELDGRNITA 117
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ M ++F QFG + VI + +GRSKGY FV F + A+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 408 NNYLMGKR 431
+ G+R
Sbjct: 75 TPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ M ++F QFG + VI + +GRSKGY FV F + A+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 408 NNYLMGKR 431
+ G+R
Sbjct: 75 TPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ M ++F QFG + VI + +GRSKGY FV F + A+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 408 NNYLMGKR 431
+ G+R
Sbjct: 75 TPVIDGRR 82
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
E ++ + FS+FG V+N ++I + RT +S GY +V F+ AQ E MN
Sbjct: 71 EGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
LV LG IP + Y S+FG + +C V++ R TGRS+G+ +V F A+ +
Sbjct: 5 LVVLG-IPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 405 MNNYLMGKRLIKAAYIPP 458
+ +G R+++ P
Sbjct: 63 -GEHFLGNRILEVKVATP 79
Score = 34.3 bits (75), Expect = 0.061
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVA 398
+++G +P + YF +FG + + + + + +G+ FV F + VA VA
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA 298
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/76 (25%), Positives = 41/76 (53%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +Y+G++P+ +++Q F + G V + +++ + T RS+G+ FV A+ +
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 402 TMNNYLMGKRLIKAAY 449
N+ +G R +K +
Sbjct: 176 MFNSSQIGGRTVKVNF 191
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY G++ + F GV +VI R TGRS+G+ F+ F Q TM
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 408 NNYLMGKRLIK 440
N + R ++
Sbjct: 281 NGVEVEGRALR 291
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G + E + +YF+QFG +++ V+ RT R +G+ F+ + + AV +++ +T
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 405 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWN 494
+ L GK + +P D MR N
Sbjct: 95 FHE-LNGKMVEVKLAVPKDMALNTMRNQMN 123
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ +IP F + ++ F FG V + +V + TG SK + FV + A AQ + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 408 N-NYLMGKRL 434
N +L GK+L
Sbjct: 411 NGRHLGGKKL 420
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + +M +YF QFG + +I + TG+SKGY FV F + A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 408 NNYLMGKR 431
N + G++
Sbjct: 79 NPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + +M +YF QFG + +I + TG+SKGY FV F + A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 408 NNYLMGKR 431
N + G++
Sbjct: 79 NPVIDGRK 86
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + + FS F S+ RV+ ++TGRS+G+ FV F + AQ M
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 408 NNYLMGKRLIK 440
N + R I+
Sbjct: 210 NGKWVSSRQIR 220
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY G+I E + + F+ G + +C++IR ++ Y FV + D A + T+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCASMAIMTL 120
Query: 408 N 410
N
Sbjct: 121 N 121
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G +P + + +F +FG + + V+ R T RS+GY FV F D A +
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
Query: 408 NNYLMGK 428
N + G+
Sbjct: 75 NPTIEGR 81
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/78 (25%), Positives = 42/78 (53%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G + ++F ++G +++ ++R R TG+ +G+ F+ F DP+V V E
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 402 TMNNYLMGKRLIKAAYIP 455
+ + GK++ IP
Sbjct: 79 D-THVINGKQVEIKRTIP 95
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G IP E ++ +F+++G V +VIR T RS+G+ FV F V +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 408 NNYLMGKRLIKAAYIPPDK 464
N M ++ P K
Sbjct: 171 NMIDMADTQVEIKKAEPKK 189
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/78 (25%), Positives = 42/78 (53%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G + ++F ++G +++ ++R R TG+ +G+ F+ F DP+V V E
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 402 TMNNYLMGKRLIKAAYIP 455
+ + GK++ IP
Sbjct: 79 D-THVINGKQVEIKRTIP 95
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAV 383
+++G IP E ++ +F+++G V +VIR T RS+G+ FV F V
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G V++ ++P + F +FG + +C+V + G+S+GY FV+F A +
Sbjct: 112 GNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQ 170
Query: 402 TMNNYLMGKRLI 437
T+N+ ++ + I
Sbjct: 171 TLNSTIVADKEI 182
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + F++F +++ R+ + +GRS Y + F A + E
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 408 NNYLMGKRLIKAAYI--PPDKRR 470
NN L+ ++I+ + PD RR
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARR 108
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ E + + F++FG + + + + +GYAFV F +P A+ AET+
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 408 NNYLMGKRLI 437
N G + +
Sbjct: 262 NGTKFGSKCL 271
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ E ++ ++FSQ G +++ +++ + G+SKG+ FV F P A +T
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 408 NNYLM-GKRLIKAAYIPPDKRRWAMR 482
+ + GK L A + R+ ++
Sbjct: 365 HGQMFHGKPLYVAIAQKKEDRKMQLQ 390
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + + + F+Q+G V + ++I R TGRS+G+ FV F D + E MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 411 NYLMGKRLI 437
+ R I
Sbjct: 71 GQDLDGRSI 79
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + + + F+Q+G V + ++I R TGRS+G+ FV F D + E MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 411 NYLMGKRLI 437
+ R I
Sbjct: 71 GQDLDGRSI 79
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +3
Query: 240 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 419
++ H + + + F QFG V + + R TG +G+ FV+F DPA A M+ YL
Sbjct: 42 NLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYL 101
Query: 420 MGKRLIKAAYIPPDKRR 470
+ R + + ++++
Sbjct: 102 LLGRELTVVFAEENRKK 118
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G +P E + + G + R+++ R +G SKGYAFV F VAQ E +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 408 NN 413
++
Sbjct: 178 HS 179
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = +3
Query: 240 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 419
++ H + + + F QFG V + + R TG +G+ F++F DPA A M+ YL
Sbjct: 43 NLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYL 102
Query: 420 MGKRLIKAAYIPPDKRR 470
+ R + + ++++
Sbjct: 103 LLGRELTVVFAEENRKK 119
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P + +FS+FG + + RV+ R+TGR++ +AF+ F
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN 273
Query: 408 NNYLMGKRLI 437
G+R+I
Sbjct: 274 GTQYEGRRII 283
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ +IP + Q+ F FG V + V R+ +TG S+G +V A+I ++
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 408 NNYLMGKRLIKAAY 449
+ +G R ++ Y
Sbjct: 170 DGTEVGGREMRVRY 183
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + ++ ++G V + + +G+SKGY VEF+DP A + +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 408 NNYLMGKRLIKAAYIPP 458
N Y R Y P
Sbjct: 296 NGYPFNGRPCVVEYASP 312
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 404
+++G IP + + ++F QFG + +++R TGRS+G+ FV + + V ++A+
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKG 191
Query: 405 MNNYLMGKRL-IKAA 446
L G ++ IK A
Sbjct: 192 NRIELSGTQVEIKKA 206
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 404
+++G + G + + Q F+ FG V+ VI R TGRS+G+ FV F + + + E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 405 MNNYLMGKRL 434
L G+++
Sbjct: 97 DGKELNGRQI 106
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 404
+++G + G + + Q F+ FG V+ VI R TGRS+G+ FV F + + + E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 405 MNNYLMGKRL 434
L G+++
Sbjct: 97 DGKELNGRQI 106
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAET 404
+++G + H E + + S++G + N R++R TG S+GY FVE+ + + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 405 MNNYLMGKRLI 437
++ + G+ +I
Sbjct: 126 HHSLIDGREII 136
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ M +F ++G + +I + T RSKGY FV F D A E
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDS 78
Query: 408 NNYLMGKR 431
+ G+R
Sbjct: 79 TPIINGRR 86
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
+++G++ + +YF QFG V + V+ GRSKGY F+ F D
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRD 62
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+IP Q+T+ + G V +V+ + +GRS+ + F A V E +
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 408 NNYLMGKRLIK 440
N + R IK
Sbjct: 138 NGNTVEGREIK 148
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ + + FS+ G V + +V R T +S G+ FV F + +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 408 NNYLMGKRLIK 440
NN L+ + I+
Sbjct: 239 NNSLLEGQKIR 249
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/83 (26%), Positives = 44/83 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ + ++ + F++FG +++C+V+R +G SKG FV F + A V M
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 408 NNYLMGKRLIKAAYIPPDKRRWA 476
N ++G + + A + R A
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRA 411
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + + Q+ YF++ V + RV R T S GY +V + + A+ + +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 408 N-NYLMGKRLIKAAYIPPD 461
N +YL GK +I+ Y D
Sbjct: 108 NYSYLNGK-MIRITYSSRD 125
Score = 35.1 bits (77), Expect = 0.035
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ ++ + ++ F Q+G +S+ V+R G+S+ + FV F +P A E +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 408 N 410
N
Sbjct: 286 N 286
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++ ++ + + FS G + +C+V G+S+GY FV+F A+ E
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIE 192
Query: 402 TMNNYLMG-KRLIKAAYIPPDKRRWA 476
+N ++ K++ ++ ++R A
Sbjct: 193 KLNGKVLNDKQIFVGPFLRKEERESA 218
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
+++G I E + QYFS++G V V + + TG+ +G+ FV F +D V + + +T
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 405 MNNYLMGK 428
++++GK
Sbjct: 68 --HFILGK 73
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + YF +FG ++ V+ T R +G+ FV + ++V ++
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSN 181
Query: 408 NNYLMGKRLIKAAYIPPD 461
+ L KR+ IP +
Sbjct: 182 FHELSDKRVEVKRAIPKE 199
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + + Q+ + F+Q G V + RV R T RS GY +V + P A +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 408 NNYLMGKRLIKAAY 449
N + R I+ Y
Sbjct: 107 NFMALNGRAIRVMY 120
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/116 (25%), Positives = 54/116 (46%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++ ++ + + FS FG + +C+V +G+SKGY FV++ AQ +
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAID 191
Query: 402 TMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSDAE 569
+N L+ K Y+ P + + +P V TN+ +K ++ SD E
Sbjct: 192 KLNGMLLND---KQVYVGP----FVHKLQRDPSGEKVKFTNVYVKNLSESL-SDEE 239
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ ++ + ++ + F +FG ++C ++R G+SKG+ FV F + A + +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 408 N 410
N
Sbjct: 285 N 285
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G + YF +FG V + ++ R TG +G+ FV F D AVA+ V E
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++G +P E ++ YF +G + +++ TGRS+G+ FV F
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF 205
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ +P + YF +FG + +V+ T RSKG+ FV F + A E
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 408 NNYLMGKRL-IKAAYI 452
N+ + G+ + K AY+
Sbjct: 71 NHTIDGRTVNCKLAYL 86
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P E ++ YF Q G V +I+ +RTG+ +G FV++ A +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 408 NNYL 419
+N +
Sbjct: 182 HNQI 185
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P E ++ YF Q G V +I+ +RTG+ +G FV++ A +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 408 NNYL 419
+N +
Sbjct: 182 HNQI 185
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + H E + FS VS+ +VIR+++T +S+GY FVEF + A+ ++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 408 NNYLM 422
+ M
Sbjct: 181 SGVTM 185
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFS-QFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + + + + F+ ++ V +V+ TGRSKGY FV F D
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 405 MNNYLMGKRLIKAAYIPPDK 464
MN R ++ P +
Sbjct: 275 MNGAFCSSRQMRVGIATPKR 294
Score = 31.1 bits (67), Expect = 0.57
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + Q FS FG V + ++ KG FV+F + A+ +
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGKGCGFVQFANRQSAEEAIGNL 382
Query: 408 NNYLMGKRLIKAAYIPPDKRRW 473
N ++GK ++ ++ ++W
Sbjct: 383 NGTVIGKNTVRLSWGRSPNKQW 404
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ + + F FG + +C+V+ G+SKG+ FV+F A +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 408 NNYLM-GKRLIKAAYIPPDKR 467
+ ++ GK+L A +I D+R
Sbjct: 172 HGSMVYGKKLFVAKFINKDER 192
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ E ++ + F +G + + +V+ GRSKG+ FV F + ++ +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVM-CHENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 408 NNYLM-GKRLI 437
N +L+ GK ++
Sbjct: 365 NGFLVDGKPIV 375
Score = 31.1 bits (67), Expect = 0.57
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +Y+G + E + FS V + + R+ TG+S YA++ F P A
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 402 TMNNY-LMGKRL 434
+N+ L GK +
Sbjct: 81 RLNHSDLKGKAM 92
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + FS FG V+ R+ + +GRS+G+ FV+F + A + M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 408 NNY-LMGKRL 434
+ L+G+ L
Sbjct: 103 DGKGLLGRPL 112
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + + FS + S+ RV+ ++TGRS+G+ FV F + AQ + +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 408 NNYLMGKRLIK 440
+G R I+
Sbjct: 201 TGKWLGSRQIR 211
Score = 30.7 bits (66), Expect = 0.75
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+I E + + F+ G V +C++IR ++ Y FV + D A + ++
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAILSL 111
Query: 408 N-NYLMGK 428
N +L G+
Sbjct: 112 NGRHLFGQ 119
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ + + + FS +G V + V+R R T RS+G+ FV + + A+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 408 N-NYLMGKRL 434
+ L G+R+
Sbjct: 65 DGKELNGRRV 74
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
+ + Q FS FG + R+IR T R KG+ F+ F A+ ++++ ++ RLI
Sbjct: 20 DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLI 78
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 461
FS+FG V + VIR +TG S YAF+EF + + M+N L+ R I +
Sbjct: 263 FSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFSQSV 322
Query: 462 KRRWA 476
+ W+
Sbjct: 323 SKLWS 327
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
E +T F FG + N + RR+G KGYA +E+ AQ MN
Sbjct: 108 EEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMN 157
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
G V++ ++ Q+ FS FG V +C+V R +G SKGY FV+F+
Sbjct: 31 GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFY 79
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ ++ + FS+FG +++C+V+ G SKG FVEF A M
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVM-VHSNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 408 NNYLMGKRLI 437
N ++G + I
Sbjct: 284 NGKMVGNKPI 293
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
V+ +P E + ++FS+ G V + R+I R + RSKG ++EF+D
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+Y+G++ E Q+ Q F FG V ++ TG+ KG+ F++F
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 449
+ + F FG V+ C V ++T S+G+ FV F AQ +N Y +++ +
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249
Query: 450 IPP 458
P
Sbjct: 250 STP 252
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.5 bits (83), Expect = 0.007
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I + + + FS+FG + + R +R R+T AF+++++ A + A++M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT------AFIDYYEMDDA-LQAKSM 304
Query: 408 NNYLMGKRLIKAAYI---PPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSDAE 569
N MG ++ ++ P K +WA Y N +N + Y K D +
Sbjct: 305 NGKPMGGSFLRVDFLRSQAPKKEQWAGSY---DNRNGNMNHKPQYPHSYEDFKGDVQ 358
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI- 437
E +TQ FSQ+G V VI + R KG+A+V F A+ +N L+ R++
Sbjct: 34 EETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVI 93
Query: 438 ----KAA-YIPPDKR 467
KAA + PPD +
Sbjct: 94 LDTTKAAKHNPPDTK 108
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLIKAAYIPP 458
F+ FG + + RVI R +GRSKG+ FV + A+ MN +L G + P
Sbjct: 54 FASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR 113
Query: 459 DKRRWAMRYTWNPQNNPVLNTN 524
+ RR + P + TN
Sbjct: 114 EPRRPLQQEPLRPSSESGFTTN 135
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
E +T FS+FG V + ++I R TG+S+ + FV F +
Sbjct: 20 EKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.011
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G + + +IP ++ + F +FG V + + R +G+ +G+AFVEF D A
Sbjct: 47 GSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQR 106
Query: 402 TMNNYLMGKRLIKAAYIPPDKRR 470
+MN R I ++R
Sbjct: 107 SMNRRSFAGREITVVVASESRKR 129
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 428
E + ++FS+ G V + R+I R + RS+G +VEF+D + L+G+
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQ 250
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+Y+G++ E + + F FG V +V R TG KG+ FV+F
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQF 332
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++ + F + G V RV+ TGRS+GY FV + A + E++
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 408 NNYLMGKRLIK 440
+ + + R I+
Sbjct: 239 DGFELEGRAIR 249
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y G++P+ + Q F V+ +R TG+S+G+AFV + I+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 408 NNYLMGKRLIKAAYIPPDK 464
+ R +K + K
Sbjct: 147 DGTEYLGRALKVNFADKPK 165
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSN----CRVIRSRRTGRSKGYAFVEFHDPAVAQIV 395
+++G + + + FS F S+ RV+ ++TGRS+G+ FV F + AQ
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 396 AETMNNYLMGKRLIK 440
MN + R I+
Sbjct: 210 INEMNGKWVSSRQIR 224
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY G+I E + + F+ G + +C++IR ++ Y FV + D A + T+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCASMAIMTL 120
Query: 408 N 410
N
Sbjct: 121 N 121
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + ++ + + FS+ + V +V+ TGRSKGY FV F D
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 405 MNNYLMGKRLIKAAYIPPDK 464
MN R ++ P K
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGG--VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
+++G + H E + F+ + + +VIR++ G S+GY FVEF VA V
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 402 TMNNYLM 422
N M
Sbjct: 163 EFNGTTM 169
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + ++ + + FS+ + V +V+ TGRSKGY FV F D
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 405 MNNYLMGKRLIKAAYIPPDK 464
MN R ++ P K
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGG--VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
+++G + H E + F+ + + +VIR++ G S+GY FVEF VA V
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 402 TMNNYLM 422
N M
Sbjct: 163 EFNGTTM 169
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/74 (20%), Positives = 38/74 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + + Q F++FG + + ++ KG FV+F + A+ E +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 359
Query: 408 NNYLMGKRLIKAAY 449
N ++GK+ ++ ++
Sbjct: 360 NGTVIGKQTVRLSW 373
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 440
E + + F FG V+ V ++TG S+G+ FV F AQ +N Y +++
Sbjct: 226 EPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILR 285
Query: 441 AAYIPP 458
+ P
Sbjct: 286 VEWATP 291
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 35.9 bits (79), Expect = 0.020
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFG--------GVSNCRVIRSRRTGRSKGYAFVEFHDP 377
G VY+ ++P G E+ + YF G G + R + T KG A V + DP
Sbjct: 8 GSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDP 67
Query: 378 AVAQIVAETMNN 413
A E NN
Sbjct: 68 HAALAAVEWFNN 79
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 35.5 bits (78), Expect = 0.026
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 461
F+QFG V++ +V+ R +G SKG+ FV + + M+ + +I A Y P
Sbjct: 76 FAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPR 135
Query: 462 KRRWAMRYTWNPQNN 506
++ ++ PQNN
Sbjct: 136 EQ----SQSYQPQNN 146
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 35.5 bits (78), Expect = 0.026
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
F +G + C V+ + TGR KGY FV F
Sbjct: 428 FESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ-FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + + + + FS+ + V +V+ TGRSKGY FV F D
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 405 MNNYLMGKRLIKAAYIPPDK 464
MN R ++ P K
Sbjct: 261 MNGVKCSSRAMRIGPATPRK 280
Score = 33.9 bits (74), Expect = 0.081
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 300 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
+ + +VIR++ G S+GY FVEF VA V + N
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167
Score = 30.7 bits (66), Expect = 0.75
Identities = 16/74 (21%), Positives = 38/74 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + + Q FS+FG + + ++ KG FV+F + A+ E +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 361
Query: 408 NNYLMGKRLIKAAY 449
N ++GK+ ++ ++
Sbjct: 362 NGTVIGKQTVRLSW 375
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P E ++ FS++G V I + R GYAFVEF D A+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 408 NNY 416
+ Y
Sbjct: 66 DGY 68
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P E ++ FS++G V I + R GYAFVEF D A+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 408 NNY 416
+ Y
Sbjct: 66 DGY 68
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P E ++ FS++G V I + R GYAFVEF D A+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 408 NNY 416
+ Y
Sbjct: 66 DGY 68
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 35.1 bits (77), Expect = 0.035
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRL 434
E + ++F GGV + R++ + TG+ +G A+ +F D +A +A+ + GK++
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMF-FGKKI 721
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 35.1 bits (77), Expect = 0.035
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRL 434
E + ++F GGV + R++ + TG+ +G A+ +F D +A +A+ + GK++
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMF-FGKKI 721
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.1 bits (77), Expect = 0.035
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ + + Q G V + + R + T + KG+AF E+ +A +
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 408 NNYL-MGKRLIKAAYIPPDK 464
+ + + R +K A DK
Sbjct: 69 SGLVSLYNRTLKFAISGQDK 88
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.1 bits (77), Expect = 0.035
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V + +P+ Q+ + FS+ G V C ++ ++ + +G+AFV+F E
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 408 NNYLMGKRLI---KAAYIPPDKRR 470
N +G R I +AA+ P + R
Sbjct: 82 NGSTVGGRRITVKQAAHRPSLQER 105
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 458
FS G V + + ++ TG KG+AFV+F A + N ++ GKR I + P
Sbjct: 351 FSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVP 409
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 34.7 bits (76), Expect = 0.046
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G++ + ++ Q+F G V ++ + G+ KG+A+VEF + Q +
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQEALQLN 152
Query: 408 NNYLMGKRL 434
+ L G++L
Sbjct: 153 ESELHGRQL 161
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.046
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
+Y+G++P E ++ FS++G V I + R GYAFVEF D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKIPPRPPGYAFVEFED 54
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.046
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
+Y+G++P E ++ FS++G V I + R GYAFVEF D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKIPPRPPGYAFVEFED 54
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.7 bits (76), Expect = 0.046
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
E + Q +++G + + RVIR + +G S+G+AF++F
Sbjct: 311 EEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
Score = 33.9 bits (74), Expect = 0.081
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 261 EHQMTQY-FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK--R 431
+ +M +Y FS+ + + R++R + T S+G+AFV F+ A E N + + +
Sbjct: 470 DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGK 529
Query: 432 LIKAAY 449
+++ AY
Sbjct: 530 ILRVAY 535
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.7 bits (76), Expect = 0.046
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + + F FG + + V+ R +G S+G+ FV + VA + M
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 408 NNYLMGKRLI 437
N + R+I
Sbjct: 98 QNKELDGRII 107
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 34.3 bits (75), Expect = 0.061
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ + ++ +F G V+ ++ + G+ KG+A+VEF + Q +
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 408 NNYLMGKRL 434
+ L G++L
Sbjct: 150 ESELHGRQL 158
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 34.3 bits (75), Expect = 0.061
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ + ++ +F G V+ ++ + G+ KG+A+VEF + Q +
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 408 NNYLMGKRL 434
+ L G++L
Sbjct: 150 ESELHGRQL 158
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 34.3 bits (75), Expect = 0.061
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ E + + FS +++ R+ +++ TG KGYA V+F D I +
Sbjct: 264 VYIGNLAWDTTERDIRKLFSDCV-INSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLD 322
Query: 408 NNYLMGK 428
+ G+
Sbjct: 323 QQVICGR 329
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.9 bits (74), Expect = 0.081
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++PHG E ++ F +FG + + + + GRS YAFV F+ A E++
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL----AFQPGRS--YAFVNFNHDEDAFAAIESL 78
Query: 408 NNYLMGKRLIKAAYIPPDK 464
+ + ++ + +K
Sbjct: 79 QGFPLSGNPLRIEFAKAEK 97
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 33.9 bits (74), Expect = 0.081
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ + FS FG V+ V++ R T +S+G AFV + A A +M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 408 N-NYLMGKRL 434
+ L G++L
Sbjct: 119 DAKILNGRKL 128
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 449
F+++G V + + R RRTG S+G+AFV + A E ++ ++ R I +
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 449
F+++G V + + R RRTG S+G+AFV + A E ++ ++ R I +
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
+Y+G++ + ++ Q+F G V+ ++ + G+ KG+A+VEF + Q
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQ 157
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ E + FS FG V + + R G S+G+AF+EF A M
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAGRAMLHM 77
Query: 408 NNYLMGKRLI 437
+ L+G++++
Sbjct: 78 DGRLIGQKIL 87
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.11
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 362
+ + F Q+G + +C+ + + +G+SKGY F+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ ++ +FS+FG + + + TGR KG+ + A+ E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ--NNPVLNTN 524
+ G L I K ++ NP NNP N
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRN 347
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.11
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 362
+ + F Q+G + +C+ + + +G+SKGY F+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ ++ +FS+FG + + + TGR KG+ + A+ E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ--NNPVLNTN 524
+ G L I K ++ NP NNP N
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRN 347
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.11
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 362
+ + F Q+G + +C+ + + +G+SKGY F+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ ++ +FS+FG + + + TGR KG+ + A+ E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ--NNPVLNTN 524
+ G L I K ++ NP NNP N
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRN 347
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
E + F FG + ++I + + RSKGYAF+E+ A + MN ++ +I
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMI 353
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 33.5 bits (73), Expect = 0.11
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
F Q+G + +C+ + + +G+SKGY F+ F
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILF 176
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYA 356
+Y+ ++ ++ ++FS+FG + + + TGR KG+A
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFA 271
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
F +G ++ C V+ + TGR+KG+ FV F
Sbjct: 183 FEVYGEITECSVVMDKDTGRAKGFGFVLF 211
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G + E + + F Q G V N V + R T + Y F+E+ A + +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 408 NNYLMGKRLIKAAYIPPDKR 467
N + + I+ DK+
Sbjct: 87 NMIKLHGKPIRVNKASQDKK 106
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ ++ + + F ++G +++ V++ G+SKG+ FV F + A E++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 89
Query: 408 NNY 416
N +
Sbjct: 90 NGH 92
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
++ G++ + + +F + G V + R + S G KGY +EF P AQ E
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVR-LSSFDDGSFKGYGHIEFASPEEAQKALEMN 444
Query: 408 NNYLMGK 428
L+G+
Sbjct: 445 GKLLLGR 451
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 267 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVE 365
++ +FS+ G V+ V R TG S+G+A+++
Sbjct: 498 ELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++++ + E + + F FG V + + R +G+ +VEF A A+
Sbjct: 99 VLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLY 158
Query: 405 MNNYLMGKRLIKAAYIPPDKRR 470
M+ + +++KA + P +++
Sbjct: 159 MDGAQIDGKVVKATFTLPPRQK 180
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++++ + E + + F FG V + + R +G+ +VEF A A+
Sbjct: 99 VLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLY 158
Query: 405 MNNYLMGKRLIKAAYIPPDKRR 470
M+ + +++KA + P +++
Sbjct: 159 MDGAQIDGKVVKATFTLPPRQK 180
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRV-IRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
VY+ ++P ++ + F FG + V +R+R+ YAFVEF D + +
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
Query: 405 MNNYLMGKRL 434
YL G+++
Sbjct: 319 SPIYLGGRQV 328
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRV-IRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
VY+ ++P ++ + F FG + V +R+R+ YAFVEF D + +
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
Query: 405 MNNYLMGKRL 434
YL G+++
Sbjct: 378 SPIYLGGRQV 387
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ +G + + FS+ G + I R+GRSKG A V F A +
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYG-IHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 408 NNYLMGKRLIK 440
NN + +L+K
Sbjct: 169 NNVQLDGKLMK 179
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
FS +G + VI + TG+SKGY FV F
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++P ++ +F +G V + + TG+S+G+A + AQ
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 408 NNYLMGKRL 434
+ GK L
Sbjct: 229 VKVIDGKHL 237
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
FS +G + VI + TG+SKGY FV F
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++P ++ +F +G V + + TG+S+G+A + AQ
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 408 NNYLMGKRL 434
+ GK L
Sbjct: 229 VKVIDGKHL 237
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++ ++ G + ++++F++FG V ++ TG+ G A++EF
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPA 380
+++YFS FG ++ V S TG S GYA+++ + A
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGA 290
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
++ + ++FS G + N V R TG SKG A++EF +
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 279 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 434
+F + G V + R +R G +G+ VEF AQ E L+G+ +
Sbjct: 316 FFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREI 367
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
+Y+ H+P + F QFG ++N + + G Y FVEF + A E
Sbjct: 321 IYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIE 378
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
VY+G++ E ++ F FG V + V R R GYAF++F DP A+
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVAR-----RPPGYAFLDFEDPRDAR 52
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++ +P + F +G + C V+ + TG++KG+ FV F
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++ +P + F +G + C V+ + TG++KG+ FV F
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 377
+Y+G++P + ++ F ++G + + I + R GYAFVEF DP
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVD---IDLKIPPRPPGYAFVEFEDP 55
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 312 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
R+I+ ++T R KG+ F+ F AQ + +N ++ RLI
Sbjct: 96 RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/76 (21%), Positives = 37/76 (48%)
Frame = +3
Query: 240 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 419
++P + + F +FG + + + R+ TG +G+ FV++ A + MN+ +
Sbjct: 53 NLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112
Query: 420 MGKRLIKAAYIPPDKR 467
+G R I + +++
Sbjct: 113 IGGREIAIVFAEENRK 128
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.5 bits (68), Expect = 0.43
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 279 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLI----KA 443
+F+ G V + R+I S + + GY FVEF P +A + E N YL ++ K
Sbjct: 701 FFNDVGEVVSVRLIVSPES-KHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT 759
Query: 444 AYIPP 458
A PP
Sbjct: 760 APYPP 764
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.5 bits (68), Expect = 0.43
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 240 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY- 416
H+P G +++ FSQ+G +R G+ + AFV+F + A A +N
Sbjct: 34 HLPDGIPHDIVSRLFSQYG----ASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 417 LMGKRL-IKAAYIPPDKRR 470
+GK L ++ A P D ++
Sbjct: 90 FLGKVLQVQRANKPNDNKK 108
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 31.1 bits (67), Expect = 0.57
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++ + + E ++ + F +G + ++ + T + KGYAF+E+
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G + + + F ++G + +V+ + +GRS+G+ F+ F + MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 411 NYLMGKRLI 437
+ R I
Sbjct: 70 GMDLDGRTI 78
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ + E + F QFG + + ++ + R KG+AF+ + A + M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 408 NNYLMGKRLI 437
+ + R+I
Sbjct: 139 HGKFLDGRVI 148
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.57
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
VY+G++ E ++ F FG + N V R R GYAF+EF D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR-----RPPGYAFLEFDD 47
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.57
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
VY+G++ E ++ F FG + N V R R GYAF+EF D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR-----RPPGYAFLEFDD 47
>At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10)
similar to 14-3-3 protein GF14 epsilon GI:5802798 from
[Arabidopsis thaliana]
Length = 196
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 124 CNPLMDLINFFCLLESNATFSSILFRNLKCDLSKNLE 14
CN ++ +IN + S SS+LF N+ D S N E
Sbjct: 102 CNDILSVINKQLIPSSTTVDSSVLFYNMLADFSSNAE 138
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 30.7 bits (66), Expect = 0.75
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 333 TGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD-KRRWAMRYTWN-PQNN 506
T + GY F+EF+ P AQ E + Y + K I A + D R ++ W PQ
Sbjct: 102 TKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQER 161
Query: 507 P 509
P
Sbjct: 162 P 162
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 30.3 bits (65), Expect = 1.00
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 333 TGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD-KRRWAMRYTWNP 497
T + GY F+EF+ P AQ E + Y + K I A + D R ++ W P
Sbjct: 101 TKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEP 156
>At5g18700.1 68418.m02219 protein kinase-related contains protein
kinase domain, INTERPRO:IPR000719
Length = 1366
Score = 30.3 bits (65), Expect = 1.00
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 375 PAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQY 545
P++ I+ E L GK L+ A++ + RRW + N + PV++ K K Y
Sbjct: 842 PSLLSII-EQGTEVLRGKALLFVAFLCKNSRRWLTNFFCNARFLPVVDRLAKEKDSY 897
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 30.3 bits (65), Expect = 1.00
Identities = 16/75 (21%), Positives = 35/75 (46%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++Y+ ++P +M F ++G + R+ + T KG AFV + D A+ +
Sbjct: 20 VLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYDAKNAVDH 76
Query: 405 MNNYLMGKRLIKAAY 449
++ + + R + Y
Sbjct: 77 LSGFNVANRYLIVLY 91
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.3 bits (65), Expect = 1.00
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++P EH++ F ++G + + I + R Y FVEF A+ +
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVD---IELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 408 NNY-LMGKRL 434
+ Y L G RL
Sbjct: 66 DGYNLDGCRL 75
>At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 407
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 586 RALLNSSASLFTALYCFLSFRFVFKTGLF*GFHVYLMA 473
RA+ S ++ +YCF+S FV G GFH+YL++
Sbjct: 209 RAMRESPWAVMLMIYCFISLWFV---GGLTGFHLYLIS 243
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+ + + + FS+FG R +R GYAFV F D A+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFG--------RVKRVDMKSGYAFVYFEDERDAEDAIRRT 55
Query: 408 NNYLMG 425
+N G
Sbjct: 56 DNTTFG 61
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
VY+G++ E ++ F FG + + V R R GYAF++F D
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVAR-----RPPGYAFLDFED 47
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++ +IP F + ++ F FG V + +V + TG SK + + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 431
+ + +F++ G V++C ++ RT S+G+AFV A+ + +N ++ R
Sbjct: 85 DKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 431
+ + +F++ G V++C ++ RT S+G+AFV A+ + +N ++ R
Sbjct: 84 DKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ I E Q+ F FG V +CR+ + +AF+EF D A+ A +
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNS--VLRFAFIEFTDEVGAR-TALNL 208
Query: 408 NNYLMG 425
+ ++G
Sbjct: 209 SGTMLG 214
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 440
F F G++ V+ + G+ G AFV F P +I + + + MG+R ++
Sbjct: 100 FEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQ-RDRHNMGRRYVE 151
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/80 (20%), Positives = 34/80 (42%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++ ++ ++ FS +G + R RT ++EF D A++ +
Sbjct: 295 GALWVNNLDSSISNEELHGIFSSYGEIREVR-----RTMHENSQVYIEFFDVRKAKVALQ 349
Query: 402 TMNNYLMGKRLIKAAYIPPD 461
+N + R +K A P+
Sbjct: 350 GLNGLEVAGRQLKLAPTCPE 369
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 185 TRRENKKKETCKRACLFGTYPTWIL*ASNDTILQS 289
TRR+ KE + C+ PTW L +N+T L S
Sbjct: 37 TRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHS 71
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 FYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKR 431
F EH ++ YF+ +G V + R+ ++ + Y FV F V I+A+ +++ R
Sbjct: 329 FTEHDVSIYFTSYGHVEDVRIPCQQK----RMYGFVTFASSETVKHILAKGNPHFICNAR 384
Query: 432 LIKAAY 449
++ Y
Sbjct: 385 VLVKPY 390
>At1g11000.1 68414.m01263 seven transmembrane MLO family protein /
MLO-like protein 4 (MLO4) identical to membrane protein
Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 573
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 510 QDCSEGSMCISWPIFVYQVVC 448
+D G + ISWP++VY +VC
Sbjct: 269 EDEFHGIVGISWPLWVYAIVC 289
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIV--AE 401
+++ H+ + +F G V + R+I + TG+ G AFVEF A++V E
Sbjct: 361 LFVAHLSRKTEITHIINFFKDVGEVVHVRLILNH-TGKHVGCAFVEFGSANEAKMVRALE 419
Query: 402 TMN 410
T N
Sbjct: 420 TKN 422
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.5 bits (58), Expect = 7.0
Identities = 24/112 (21%), Positives = 43/112 (38%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G+ + + + + F ++G V R GYAFV F D A+ +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVD--------RVDMKSGYAFVYFEDERDAEDAIRKL 55
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSD 563
+N+ G + + WA P+ + +NLK K + D
Sbjct: 56 DNFPFGYEKRRLSV------EWAKGERGRPRGDAKAPSNLKPTKTLFVINFD 101
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 82 ESNATFSSILFRNLKCDLSKNLEV*IK 2
+++ +F+ +L NLK D+ +NLE IK
Sbjct: 127 DASESFAQLLLENLKNDMKENLETLIK 153
>At2g22460.1 68415.m02663 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 245
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 516 NTNLKLKKQYNAVKSDAEELRSA 584
NTNL+ KK YN +KS RS+
Sbjct: 55 NTNLRGKKLYNDIKSRTSSFRSS 77
>At1g33940.1 68414.m04206 hypothetical protein
Length = 497
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 375 PAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQY 545
P++ I+ E L GK + A++ + RRW + N + PV++ K K Y
Sbjct: 139 PSLLSII-EQGTEVLRGKAPLFVAFLCKNSRRWLTNFFCNARFLPVVDRLAKEKDSY 194
>At4g27100.1 68417.m03895 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 487
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 327 RRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDK 464
R TGRS G H ++ Q+V ++ +L RLI+ I DK
Sbjct: 290 RSTGRSVGVEAQLTHLSSITQVVDPKLHQHLGTTRLIECWVINADK 335
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,135,772
Number of Sequences: 28952
Number of extensions: 204225
Number of successful extensions: 835
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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