Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e01r
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...   103   3e-23
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    29   0.83 
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    27   1.9  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    27   2.5  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    26   4.4  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   4.4  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   4.4  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    26   5.8  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   5.8  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   7.7  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   7.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.7  

>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score =  103 bits (246), Expect = 3e-23
 Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 4/202 (1%)
 Frame = -3

Query: 666 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGP-NDTIKLKMDVSKAVVCEIELTV 490
           KV+C+G NY  H  E     P  PF F K  S +V P +  + +  DVS     E+ L +
Sbjct: 7   KVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVSAHYEVELGLIM 66

Query: 489 VIGKKASKVDSSHAF-DYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCPIGPWI 319
                A +  SS+++ D +  Y +  D+ A + +   K   L     K  DTF P+GP I
Sbjct: 67  KDRLPARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLPVGP-I 125

Query: 318 VTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGTPG 139
           +    I +P N+ ++ S+NG   QK +T+  ++KIP I + ++  M+L PGD++LTGTP 
Sbjct: 126 IPKHLIPDPHNVILELSLNGKVVQKDSTSLMLNKIPKIFSSITEAMSLNPGDLVLTGTPK 185

Query: 138 GVGVYRNPPEFLQPGDVITSEI 73
           GVG        + PGD++++ +
Sbjct: 186 GVGP-------VVPGDILSARL 200


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
 Frame = -3

Query: 540 LKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQLLL 361
           L  D+ + V   ++L  +I    + VD+      +   + A D         +K+  +L 
Sbjct: 302 LSKDLERKVSSRLQLDTIISNIDNAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVL- 360

Query: 360 GKAMDTFCPIGPWIVTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVM 181
               DT       I  + +  NPQN++++     V+K+  +      K+ DI++ L NV 
Sbjct: 361 ENVNDTLAR-SEEIDATIQTYNPQNIDLEDE--AVEKEWQDLVAEEQKVEDIVSTLGNVS 417

Query: 180 TLLPGD-IILTGT 145
              P D   LT T
Sbjct: 418 LKTPSDTFTLTNT 430


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 125 YTPTPPGVPVKMMSPGKRVIT-FDN---LAIISGILWINWFVLLFCF 253
           YT  P   P+++ SP ++ +T F +   L I+  I+WI+W   +F F
Sbjct: 268 YTSIPLPCPLQLPSPDQKPMTSFSSEQMLYIMYNIVWISWNCGIFSF 314


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 177 LLPGDIILTGTPGGVGVYRNPPEFLQPGDVITSEIENIGTFETRVEE 37
           +LPG ++  G P G G  +     +     I    +N  T+  +VEE
Sbjct: 4   VLPGQVVARGAPNGEGTVKRGDYIISTRTGIFDPEKNSVTYPRKVEE 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 180 TLLPGDIILTGTPGGVGVYRNPPEFLQPG 94
           +LLP +I     P G G+Y+NP     PG
Sbjct: 232 SLLPSNITAILYPDGRGLYQNPDGTFSPG 260


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -3

Query: 582 KFPSTVVGPNDTIKLKM---DVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTI 421
           K P+ ++   D   LK+       A++ E E+T VI K   ++ +    D+V+ YTI
Sbjct: 210 KLPNDLLNFADRHHLKLFFHSDPSALLSESEITSVIHKACPEIPNPARVDWVIRYTI 266


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 418 PGYRRYRLGEEQENQSIAVG*SNGHLLPNWTLDSYQR*DRKSSEFECKVQ 269
           PG  +  LG  +  ++  V   + HLLP W+   +++    ++ F  KV+
Sbjct: 13  PGISKAFLGSNRVLETAGVSQLSKHLLPQWSGVPHRKISASATNFNDKVK 62


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 321 IVTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIP-DIIARLSNVMTLL 172
           I+ S  I   Q+++V  SIN ++K+KSNT   + K+  D I  L    T+L
Sbjct: 619 IILSGPIITEQDVDV--SINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVL 667


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 235 KPIYPQNPGYYCKIIKCYDSFARRHHFDRDSWRCWCIQK 119
           K  Y Q    Y ++ K Y   +    FD+D W  W   K
Sbjct: 272 KLTYQQLTDLYVELSKKYPIVSIEDPFDQDDWSAWTHMK 310


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 494  VSSISQTTALLTSIFNLMVSFGPTTVLGNLLNIKGSSGGVNFCSSQ 631
            V  I Q T LL  I N  V      V GNLL++      +NF   Q
Sbjct: 1895 VDHIGQQTNLLLEIVNYNVENQQYVVSGNLLSLSTLGHVLNFLKVQ 1940


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 672 NDKVLCVGLNYKDHCEEQKLTPPELPFI 589
           ND    +  +  DH +  ++TP ELPF+
Sbjct: 247 NDSTAKIETSIHDHRDISRITPFELPFV 274


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 423 LCSRGHNQRHAMNLLYWLSSRL 488
           LC +G+N+   + L YW+ +R+
Sbjct: 261 LCHKGYNRNLELILSYWIPTRI 282


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 229 IYPQNPGYYCKIIKCYDSFARRHHFDRDSWRCWCIQKP 116
           +Y  +P Y C II      A++ H D  S+    ++KP
Sbjct: 159 LYRLSPSYICSIIDWIFVIAQQLHIDFASFEFKILKKP 196


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 156 LTGTPGGVGVYRNPPEFLQPGDVITSEIENIGTF 55
           LT +   + +YR     L P + I S+I+N GT+
Sbjct: 43  LTSSTVTLTLYRGGNSALTPIETIASDIDNTGTY 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,214
Number of Sequences: 5004
Number of extensions: 71453
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)