Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e01r
         (683 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             25   2.2  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    25   2.9  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    24   3.9  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   5.1  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.0  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   9.0  

>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 239 LLFCF*TP-LMLHFTFKF*GFPISSLVTIQGPIGQKVS 349
           L F   TP L+++FT  F   PIS L TI+G +  K +
Sbjct: 78  LWFMAWTPYLVINFTGIFKAAPISPLATIRGSLFAKAN 115


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 521 LLTSIFNLMVSFGPTTVLGNLLNIKGSSGGVNFCSS 628
           LL  IF++   F    V    +NI GS+  VN+ +S
Sbjct: 444 LLMGIFSMYTGFVYNDVFSKGMNIFGSAWSVNYNTS 479


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 521 LLTSIFNLMVSFGPTTVLGNLLNIKGSSGGVNFCSS 628
           LL  +F++   F    +    +NI GS+  VN+ +S
Sbjct: 454 LLMGLFSMYTGFVYNDIFSKSMNIFGSAWSVNYNTS 489


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 141 GGVGVYRNPPEFLQPGDVITSEIENIGTFETR 46
           GG+GV R PP+ +   D++     + G +E R
Sbjct: 96  GGIGVLRLPPDKVWKPDIVLFNNAD-GNYEVR 126


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 58   STNVLYFTRDHVTGLKKLWGVSVYTNTARSPGQNDVSWQKSHN 186
            S+NV+Y+T + V  LK+   V + +N   +   ND     S N
Sbjct: 1920 SSNVMYYTYNSVGKLKQRGIVKLSSNELSNYLPNDSDLPASSN 1962


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 58   STNVLYFTRDHVTGLKKLWGVSVYTNTARSPGQNDVSWQKSHN 186
            S+NV+Y+T + V  LK+   V + +N   +   ND     S N
Sbjct: 1921 SSNVMYYTYNSVGKLKQRGIVKLSSNELSNYLPNDSDLPASSN 1963


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 228 IGLYYSSVSERH*CCTLHSNSEDFRSH 308
           + +YY+++  RH   T H +   + SH
Sbjct: 623 VPVYYANLGSRHSSYTSHQSRISYTSH 649


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,509
Number of Sequences: 2352
Number of extensions: 18125
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)