Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e01r
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical pr...   125   3e-29
U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    29   3.1  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    29   3.1  
AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in ...    29   3.1  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    29   3.1  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    29   3.1  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   5.4  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK688.3 protein.
          Length = 214

 Score =  125 bits (302), Expect = 3e-29
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 2/180 (1%)
 Frame = -3

Query: 666 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVV 487
           K++CVG NYKDH  E     P+ P +F K  ++ +   + I         +  E+EL VV
Sbjct: 13  KIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQN-LHQEVELGVV 71

Query: 486 IGKKASKVDSSHAFDYVLGYTIAQDIGATDW--EKNKKISQLLLGKAMDTFCPIGPWIVT 313
           I KKAS++  S A DY+ GYT+A D+ A D+  E  K  +   L K+ D  CPIG ++  
Sbjct: 72  ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAPWFLAKSFDGSCPIGGFLPV 131

Query: 312 SDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGTPGGV 133
           SD I NP ++ + C ING  +Q+  T+  I  IP ++   +   TL  GD++LTGTP GV
Sbjct: 132 SD-IPNPHDVELFCKINGKDQQRCRTDVMIFDIPTLLEYTTQFFTLEVGDVVLTGTPAGV 190


>U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical
           protein M03F4.6 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 237 YYSSVSERH*CCTLHSNSEDFRSHRW*LSKVQLGRRC 347
           Y+ +  ER   CT     E+  S+   L+KVQLG RC
Sbjct: 316 YHENNDERFLTCTKDCTLEEVASNDRCLAKVQLGARC 352


>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 160 HFDRDSWRCWCIQKPPRVSST 98
           HF R  WRC CI++P   S+T
Sbjct: 862 HFWRSQWRCVCIEEPFTNSNT 882


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 160 HFDRDSWRCWCIQKPPRVSST 98
           HF R  WRC CI++P   S+T
Sbjct: 620 HFWRSQWRCVCIEEPFTNSNT 640


>AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform d protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 160 HFDRDSWRCWCIQKPPRVSST 98
           HF R  WRC CI++P   S+T
Sbjct: 556 HFWRSQWRCVCIEEPFTNSNT 576


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 160 HFDRDSWRCWCIQKPPRVSST 98
           HF R  WRC CI++P   S+T
Sbjct: 785 HFWRSQWRCVCIEEPFTNSNT 805


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 160 HFDRDSWRCWCIQKPPRVSST 98
           HF R  WRC CI++P   S+T
Sbjct: 862 HFWRSQWRCVCIEEPFTNSNT 882


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 660 LCVGLNYKDHCEEQKLTPPELP-FIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVI 484
           L +  NY     +Q LT   +  +++N+F S ++  N  I +   +    +C ++++VVI
Sbjct: 67  LLLSYNYMSSTLDQTLTITTIDIYVYNEFQSLLIAINRFIAMYAPLHYNKLCSVKVSVVI 126


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -3

Query: 564 VGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKN 385
           + P+D   L  + ++ ++CEIE    + +   K D     +YVL   +  ++   D E+ 
Sbjct: 427 IAPSDLTHLFHNETEIIICEIEYLQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLD-ERF 485

Query: 384 KKISQ 370
           + I Q
Sbjct: 486 EDIKQ 490


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -3

Query: 564 VGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKN 385
           + P+D   L  + ++ ++CEIE    + +   K D     +YVL   +  ++   D E+ 
Sbjct: 427 IAPSDLTHLFHNETEIIICEIEYLQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLD-ERF 485

Query: 384 KKISQ 370
           + I Q
Sbjct: 486 EDIKQ 490


>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 144 PGGVGVYRNPPEFLQPGDVITSEIENIGTFETRVEE 37
           PGG+   RN P++LQ  D     +  I   E  V+E
Sbjct: 550 PGGLKTMRNDPQWLQVVDHFCDYVRKIEKLEENVKE 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,385,211
Number of Sequences: 27780
Number of extensions: 408704
Number of successful extensions: 1159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)