Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e01r
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15940.1 68417.m02420 fumarylacetoacetate hydrolase family pr... 118 3e-27
At3g16700.1 68416.m02133 fumarylacetoacetate hydrolase family pr... 111 3e-25
At3g11010.1 68416.m01329 disease resistance family protein / LRR... 30 1.2
At3g53380.1 68416.m05891 lectin protein kinase family protein co... 30 1.6
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 30 1.6
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 29 2.9
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 29 2.9
At5g27060.1 68418.m03229 disease resistance family protein conta... 29 3.8
At3g09830.2 68416.m01173 protein kinase, putative similar to pro... 29 3.8
At3g09830.1 68416.m01172 protein kinase, putative similar to pro... 29 3.8
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 5.0
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 28 5.0
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 28 5.0
At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase f... 28 5.0
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote... 28 6.6
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 6.6
At3g24240.1 68416.m03042 leucine-rich repeat transmembrane prote... 28 6.6
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi... 28 6.6
At3g63300.2 68416.m07118 expressed protein 27 8.8
At3g63300.1 68416.m07117 expressed protein 27 8.8
At2g14910.2 68415.m01696 expressed protein 27 8.8
At2g14910.1 68415.m01695 expressed protein 27 8.8
>At4g15940.1 68417.m02420 fumarylacetoacetate hydrolase family
protein contains Pfam domain, PF01557:
fumarylacetoacetate hydrolase family protein
Length = 222
Score = 118 bits (285), Expect = 3e-27
Identities = 69/181 (38%), Positives = 105/181 (58%), Gaps = 2/181 (1%)
Frame = -3
Query: 666 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVV 487
K++CVG NY H +E P+ P IF K S+ + TI++ + ++ E+EL +V
Sbjct: 15 KIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPLD-SLHHEVELALV 73
Query: 486 IGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCPIGPWIVT 313
IG+KA V S A DY+ GY +A D+ A + + + K S L + K DTF PI ++
Sbjct: 74 IGQKARDVPESIAMDYIGGYAVALDMTARELQASAKASGLPWTVAKGQDTFTPISS-VLP 132
Query: 312 SDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGTPGGV 133
+ +P NL + ++G +QK T I K+P +I+ +S++MTL GD+ILTGTP GV
Sbjct: 133 KAMVRDPDNLELWLKVDGETRQKGLTKDMIFKVPYLISYISSIMTLY-GDVILTGTPEGV 191
Query: 132 G 130
G
Sbjct: 192 G 192
>At3g16700.1 68416.m02133 fumarylacetoacetate hydrolase family
protein contains Pfam domain, PF01557:
fumarylacetoacetate hydrolase family protein
Length = 224
Score = 111 bits (268), Expect = 3e-25
Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 2/181 (1%)
Frame = -3
Query: 666 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVV 487
K++ VGLNY H +E P+ P +F K S+ + TI++ + ++ E+EL VV
Sbjct: 15 KIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPLD-SLHHEVELAVV 73
Query: 486 IGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCPIGPWIVT 313
IG+KA V A +Y+ GY +A D+ A + + + S L L K DTF PI ++
Sbjct: 74 IGQKARDVPERLAMNYIGGYALALDMTARELQVSAMASGLPCTLAKGQDTFTPISS-VLP 132
Query: 312 SDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGTPGGV 133
+ +P NL + ++ +QK T I K+P +I+ +S+VMTL GD+ILTGTP G+
Sbjct: 133 KAMVLDPNNLELWLKVDDETRQKGWTKDMIFKVPYLISYISSVMTLFKGDVILTGTPEGI 192
Query: 132 G 130
G
Sbjct: 193 G 193
>At3g11010.1 68416.m01329 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 894
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 282 NVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGT 145
NV ++ G+ + N+F +P I LSN+M D TGT
Sbjct: 244 NVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGT 289
>At3g53380.1 68416.m05891 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain,
PF00138: Legume lectins alpha domain, and PF00139:
Legume lectins beta domain
Length = 715
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 201 ARLSNVMTLLPGDIILTGTPGGVGVYRNPPEFLQPGDVITSEIENIGTF 55
ARLSN + L D+ + + G +Y NP F QPG + + +F
Sbjct: 40 ARLSNGIVGLTRDLSVPNSGAGKVLYSNPIRFRQPGTHFPTSFSSFFSF 88
>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
to chromomethylase CMT3 [Arabidopsis thaliana]
GI:14583092, GI:14647157
Length = 839
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = -3
Query: 654 VGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKL-------KMDVSKAVVCEIEL 496
+ LN D+ E P F FP +VGP + +KL K++ K +V + L
Sbjct: 661 LNLNINDY-ERVCQVPKRKGANFRDFPGVIVGPGNVVKLEEGKERVKLESGKTLVPDYAL 719
Query: 495 TVVIGK 478
T V GK
Sbjct: 720 TYVDGK 725
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 582 KFPSTVVGPNDTIKLKMDVSKAV 514
++P ++ PNDTIKL ++ +K V
Sbjct: 148 RYPDPLIKPNDTIKLDLEANKIV 170
>At2g48050.1 68415.m06014 expressed protein ; expression supported
by MPSS
Length = 1500
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = -3
Query: 525 SKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQ 370
+++ + EI + +++ + S + SS FDYV Y A+ IGA E+ KK ++
Sbjct: 700 ARSALVEIIIFMLVSLQ-SYMFSSQEFDYVSRYLEAEQIGAIVREQEKKAAR 750
>At5g27060.1 68418.m03229 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 957
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 282 NVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGT 145
NV ++ G+ + N+F +P I LSN+M D TGT
Sbjct: 307 NVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGT 352
>At3g09830.2 68416.m01173 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 418
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +1
Query: 412 ILGYCVAEDIIKGMR*IYFTGFLPDYNRQFYLADHSFTYI 531
+LGYC AED +G++ + ++P+ + +F+L+ S T +
Sbjct: 149 LLGYC-AEDDERGIQRLLVYEYMPNRSVEFHLSPRSLTVL 187
>At3g09830.1 68416.m01172 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 418
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +1
Query: 412 ILGYCVAEDIIKGMR*IYFTGFLPDYNRQFYLADHSFTYI 531
+LGYC AED +G++ + ++P+ + +F+L+ S T +
Sbjct: 149 LLGYC-AEDDERGIQRLLVYEYMPNRSVEFHLSPRSLTVL 187
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 124 QKPPRVSSTR*RDHE*NRE 68
Q PPR SSTR RDH+ R+
Sbjct: 879 QSPPRKSSTRERDHDLGRD 897
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 582 KFPSTVVGPNDTIKLKMDVSKAV 514
++P ++ PNDTIKL ++ +K V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIV 170
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 582 KFPSTVVGPNDTIKLKMDVSKAV 514
++P ++ PNDTIKL ++ +K V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIV 170
>At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase
family protein contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 331
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 502 YLADHSFTYIHF*LDGVVWSHHSTRKFVEYKRKFWRRQF 618
Y+ D +FT + L +VWSH + V Y+ W R F
Sbjct: 249 YVGDSAFT--KYRLVSMVWSHGNLYNCVAYENNRWVRHF 285
>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1173
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 234 NQFIHKIPDIIARLSNVMTLLPGDIILTGT 145
N F +IPD I SN+ TL D LTGT
Sbjct: 441 NHFTGEIPDDIFNCSNLETLSVADNNLTGT 470
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = -3
Query: 384 KKISQLLLGKAMDTFCPIGPWIVTSDEIGNPQNL--NVKCSINGVQKQ-----KSNTNQF 226
+K+ +LL+ A+ +GP++ + G P+ L ++K + + K++ F
Sbjct: 23 EKLDELLISSAICNGEDLGPFVRKTFGTGKPETLLHHLKFFARSKESEIEEVCKAHYQDF 82
Query: 225 IHKIPDIIARLSNVMTL 175
IH + D+ + LS+V +L
Sbjct: 83 IHAVDDLKSLLSDVESL 99
>At3g24240.1 68416.m03042 leucine-rich repeat transmembrane protein
kinase, putative similar to CLV1 receptor kinase
GB:AAB58929 from [Arabidopsis thaliana]
Length = 1141
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 240 NTNQFIHKIPDIIARLSNVMTLLPGDIILTGT 145
N+NQ KIP I++ S + +L+ D +LTG+
Sbjct: 161 NSNQLTGKIPPDISKCSKLKSLILFDNLLTGS 192
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 282 NVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGT-PGGVGV 127
N S++G+Q + NQF KIP + RL ++ L+ + +G+ P +G+
Sbjct: 532 NPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGM 584
>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 895
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = -3
Query: 507 EIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQLLLG 358
E+EL V KKA +++ S A Y+ I ++G +W++ ++ +L+ G
Sbjct: 836 EVELGKVAAKKAIELEPSDAGAYISLSNILAEVG--EWDEVEETRKLMKG 883
>At3g63300.2 68416.m07118 expressed protein
Length = 382
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +1
Query: 223 DKLVCITLLFLNAINAALYIQILRISDL--IAGNYPRSNWAEGVHCF---TQQQLTDFLV 387
D +V +T A+ A ++ + ++ IA P A C T+ + F
Sbjct: 181 DDIVTLTAAAATALRGAATLKARALKEVWNIAAVLPAEKGASSALCGQVDTKHSDSSFSG 240
Query: 388 LLPVCSADILGYCVAEDIIKG 450
LPV D LG C E + KG
Sbjct: 241 ELPVAGEDFLGVCNQELLAKG 261
>At3g63300.1 68416.m07117 expressed protein
Length = 498
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +1
Query: 223 DKLVCITLLFLNAINAALYIQILRISDL--IAGNYPRSNWAEGVHCF---TQQQLTDFLV 387
D +V +T A+ A ++ + ++ IA P A C T+ + F
Sbjct: 297 DDIVTLTAAAATALRGAATLKARALKEVWNIAAVLPAEKGASSALCGQVDTKHSDSSFSG 356
Query: 388 LLPVCSADILGYCVAEDIIKG 450
LPV D LG C E + KG
Sbjct: 357 ELPVAGEDFLGVCNQELLAKG 377
>At2g14910.2 68415.m01696 expressed protein
Length = 366
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 597 PFIFNKFPSTVVGPNDTIKLKMDVSKAVVCE 505
P + +KFP++ V P +T+K K D A + E
Sbjct: 299 PKMHSKFPASEVPPTETVKAKSDEDCAELVE 329
>At2g14910.1 68415.m01695 expressed protein
Length = 386
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 597 PFIFNKFPSTVVGPNDTIKLKMDVSKAVVCE 505
P + +KFP++ V P +T+K K D A + E
Sbjct: 299 PKMHSKFPASEVPPTETVKAKSDEDCAELVE 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274,351
Number of Sequences: 28952
Number of extensions: 372221
Number of successful extensions: 1058
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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