Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e01f
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    44   2e-05
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    26   3.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.9  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.9  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   6.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.6  

>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
 Frame = +3

Query: 273 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGP-NDTIKLKMDVSKAVVCEIELTV 449
           KV+C+G NY  H  E     P  PF F K  S +V P +  + +  DVS     E+ L +
Sbjct: 7   KVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVSAHYEVELGLIM 66

Query: 450 VIGKKASKVDSSHAF-DYVLGYTIAQDIGATDW--EKNKKISQLLLGKAMDTFCP 605
                A +  SS+++ D +  Y +  D+ A +   E  KK       K  DTF P
Sbjct: 67  KDRLPARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLP 121


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 357 KFPSTVVGPNDTIKLKM---DVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTI 518
           K P+ ++   D   LK+       A++ E E+T VI K   ++ +    D+V+ YTI
Sbjct: 210 KLPNDLLNFADRHHLKLFFHSDPSALLSESEITSVIHKACPEIPNPARVDWVIRYTI 266


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -3

Query: 445  VSSISQTTALLTSIFNLMVSFGPTTVLGNLLNIKGSSGGVNFCSSQ 308
            V  I Q T LL  I N  V      V GNLL++      +NF   Q
Sbjct: 1895 VDHIGQQTNLLLEIVNYNVENQQYVVSGNLLSLSTLGHVLNFLKVQ 1940


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 267 NDKVLCVGLNYKDHCEEQKLTPPELPFI 350
           ND    +  +  DH +  ++TP ELPF+
Sbjct: 247 NDSTAKIETSIHDHRDISRITPFELPFV 274


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 516 LCSRGHNQRHAMNLLYWLSSRL 451
           LC +G+N+   + L YW+ +R+
Sbjct: 261 LCHKGYNRNLELILSYWIPTRI 282


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 295 FNPTHSTLSFPWTGAFSVIPDKG 227
           F+PTH TL  P   AF   P +G
Sbjct: 511 FDPTHDTLQTPDGKAFKFRPPQG 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,548
Number of Sequences: 5004
Number of extensions: 52993
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)