Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e01f
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0540 - 34603979-34604094,34604173-34604290,34604394-346044... 54 7e-08
03_04_0111 + 17364496-17364612,17364741-17364915,17365847-173658... 53 2e-07
07_01_0606 + 4506331-4506645 33 0.18
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 31 0.71
04_04_1695 + 35433975-35437040 30 1.2
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 30 1.6
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 29 2.2
08_02_1253 - 25602258-25602640,25603305-25603767 28 5.0
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 28 6.6
01_04_0129 - 16449657-16449965 28 6.6
>03_06_0540 -
34603979-34604094,34604173-34604290,34604394-34604444,
34604829-34604891,34605312-34605364,34606084-34606258,
34606375-34606479
Length = 226
Score = 54.4 bits (125), Expect = 7e-08
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Frame = +3
Query: 273 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVC---EIEL 443
K++ VG N+ H +E P+ P +F K S+ + ++V + V E+EL
Sbjct: 14 KIVGVGRNFVAHAKELGNPVPKEPVLFLKPTSSFLHAG-VAGAAIEVPEPVESLHHEVEL 72
Query: 444 TVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCP 605
VVI ++A V + A D+V GY +A D+ A + + K + L LGKA DTF P
Sbjct: 73 AVVISQRARDVPEASAMDFVGGYALALDMTARELQSAAKSAGLPWTLGKAQDTFTP 128
>03_04_0111 +
17364496-17364612,17364741-17364915,17365847-17365899,
17372593-17372655,17372794-17372844,17372949-17373066,
17373145-17373260
Length = 230
Score = 52.8 bits (121), Expect = 2e-07
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Frame = +3
Query: 273 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPN---DTIKLKMDVSKAVVCEIEL 443
K++ VG NY H +E P+ P +F K S+ + I++ V +++ E+EL
Sbjct: 18 KIIGVGRNYVAHAKELGNPVPKEPLLFLKPTSSFLHAGVAGAAIEVPGPV-ESLHHEVEL 76
Query: 444 TVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCP 605
VV+ ++A V + A D+V GY +A D+ A +++ K + L L KA DTF P
Sbjct: 77 AVVLSQRARDVPEASAMDFVGGYALALDMTAREFQSAAKSAGLPWTLCKAQDTFTP 132
>07_01_0606 + 4506331-4506645
Length = 104
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 401 KNGCK*SCGLRDRTDGCN 454
+ GC +CG+RDRTDGC+
Sbjct: 44 RGGCAHACGVRDRTDGCS 61
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 393 IKLKMDVSKAVVCEIELTVVIGKKAS-KVDSSHAFDYVLGY 512
IK DV K +C IEL K+ S ++SS+ F++ +G+
Sbjct: 95 IKFGRDVDKGTICSIELDPDKAKQLSDAIESSYWFEFFIGF 135
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +3
Query: 306 HCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSS 485
H E +++ P EL F+ FP++ P D ++++ D ++V ++ V+G A++ + +
Sbjct: 895 HAEAEQVHPDELDEEFDTFPTS--KPGDVVRMRYDRLRSVAGRVQ--TVVGDLATQGERA 950
Query: 486 HA 491
A
Sbjct: 951 QA 952
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 333 PELPFIFNKFPSTVVGPNDTIKLKMDVSKAV 425
P +P + N F VV PN++ ++K V+KAV
Sbjct: 897 PLVPDVINAFAQVVVSPNESDEVKTVVAKAV 927
>01_04_0124 +
16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 414 SKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKK 560
S++ EI + +++ + S + SS FDYV Y A+ IGA E+ KK
Sbjct: 630 SRSAFVEIVIFLLVSIQ-SYIFSSGEFDYVSRYLEAEQIGAMVHEQEKK 677
>08_02_1253 - 25602258-25602640,25603305-25603767
Length = 281
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 499 MSSATQ*PRISALQTGRRTRKSVNCCWVKQWTPS 600
M ++ PR SAL TG R + C W+ P+
Sbjct: 9 MVASAMEPRSSALNTGDRAASTARCAWMSVSPPT 42
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/67 (34%), Positives = 28/67 (41%)
Frame = -3
Query: 463 FFPITTVSSISQTTALLTSIFNLMVSFGPTTVLGNLLNIKGSSGGVNFCSSQ*SL*FNPT 284
F P T S Q T L S + T++G L G N C SL +PT
Sbjct: 301 FQPDTPPSETKQITILKPSD---SIKRNGNTLVGRQLYSDGDESEGNRCRRHQSLSVSPT 357
Query: 283 HSTLSFP 263
+STLS P
Sbjct: 358 NSTLSEP 364
>01_04_0129 - 16449657-16449965
Length = 102
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 324 LTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIE 440
+T P ++ K P GP I L+ D+ +AV C+ E
Sbjct: 1 MTVPHYTYMMMKMP----GPRGVISLRSDIKQAVTCDKE 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,888
Number of Sequences: 37544
Number of extensions: 332332
Number of successful extensions: 726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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