Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11e01f
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08) 65 5e-11
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33) 29 2.2
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33) 29 2.2
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 29 2.9
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11) 29 2.9
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 29 2.9
SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 28 5.1
SB_29065| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)
Length = 223
Score = 64.9 bits (151), Expect = 5e-11
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 234 SGITLKAPVHGNDKVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTI 395
S + LKAP++ +K++C G+NY DHC EQ + P P IF+KF S + P D I
Sbjct: 16 SNLKLKAPIYNPEKIICTGMNYADHCYEQNMPIPTEPVIFSKFASAIAAPGDPI 69
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +3
Query: 456 GKKASKVD-------SSHAFDYVLGYTIAQDIGATDWEKNKKISQLLLGKAMDTFCP 605
G K+ KVD A DYV GYT+A D+ A DW+ K Q LLGK D + P
Sbjct: 154 GAKSEKVDLIFPGGGEEDAMDYVAGYTVAHDVSARDWQLKKNAGQWLLGKTGDAYLP 210
>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 432 EIELTVVIGKKASKVDSSHAFDYVLGYTIAQDI 530
E+EL VVIG+K + ++ A D+V GY +A D+
Sbjct: 882 EVELGVVIGQKGANINEEAAMDHVGGYALALDM 914
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 461 LPDYNRQFYLADHSFTYIHF*LDGVVWSHHSTRKFVEY 348
L D N Q Y D F Y LDG +H++T+ ++Y
Sbjct: 119 LKDTNCQVYKNDGQFAYFRSPLDGCGTTHNTTKTHIKY 156
>SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
Length = 1019
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 321 KLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFD 497
K+T PE PF S V D + L + V ++ V++GK+ SK DS A+D
Sbjct: 443 KVTVPEKPFTRRGVLSIVNSVYDPLGLAVPVMLEGRTMLQKLVLMGKRRSKDDSPLAWD 501
>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
Length = 1584
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 321 KLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFD 497
K+T PE PF S V D + L + V ++ V++GK+ SK DS A+D
Sbjct: 835 KVTVPEKPFTRRGVLSIVNSVYDPLGLAVPVMLEGRTMLQKLVLMGKRRSKDDSPLAWD 893
>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
Length = 712
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 348 IFNKFPSTVVG-PNDTIKLKMDVSKAVVCEIELTVVIGKKAS 470
+ + STV+G N++ ++ V+ AV+C++ + VIG KA+
Sbjct: 533 VCREMDSTVIGGENNSNMIRKGVNGAVICKVANSYVIGGKAN 574
>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
Length = 1170
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 321 KLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFD 497
K+T PE PF S V D + L + V ++ V++GK+ SK DS A+D
Sbjct: 668 KVTVPEKPFTRRGVLSIVNSVYDPLGLAVPVMLEGRKMLQKLVLMGKRTSKDDSPLAWD 726
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 402 KMDVSKAVVCEIELTVVIGKKASKVDSSHAFDY--VLGYTIAQDIGATDWEKNKKI 563
K+ +++ + ++ +T++ S VDSS +DY G TI G W+ +KI
Sbjct: 1090 KLKLARKRLGDLGVTIITVALGSTVDSSKIYDYCPYRGNTIYSKDGGISWDMAEKI 1145
>SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 339 VLEASISALHSDLCNLIPRI-VLYHFHGP 256
VL ++ D C PRI ++YHFHGP
Sbjct: 127 VLAEYLNLTRVDYCPGTPRIPLIYHFHGP 155
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 28.3 bits (60), Expect = 5.1
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = +3
Query: 258 VHGNDKVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEI 437
+ G + CV + +HCE L PP P + S V N+ ++L + ++ +V I
Sbjct: 2925 LEGGYRCTCVEGYFGEHCENGTLAPP--PSSAPRQASNDV--NNDVELGLSIAFVLVVLI 2980
Query: 438 ELTVVI----GKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQLL 575
V++ KKA+K +S + Y + D++K K QLL
Sbjct: 2981 VALVILYFYFRKKAAK-ESGKYYPSEEEYKGGYPMSPLDFDKLDKEEQLL 3029
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 381 PNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDI 530
P+ + + + A+ ++ VV+G + +D+ +FD +LG T +D+
Sbjct: 147 PDPITQRLLQIKAALPGVVQNVVVLGFRPGSIDALASFDVLLGKTTMKDV 196
>SB_29065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 566 TDFLVLLPVCSADILGYCVAEDIIKGMR*IYFTGFLPDYNRQFYLA 429
T F++LL + S I C+A +I IY +G + ++ RQFYLA
Sbjct: 124 TSFILLLVMNSFSI---CMAPFVIVSFTEIY-SGTMDNFPRQFYLA 165
>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.5 bits (58), Expect = 8.9
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 354 NKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDS-----SHAFDYVLGYTI 518
NK P T V N + + +VV + L V ++ S + S + +D+ +G+ +
Sbjct: 386 NKIPVTFVYDNFLSLITATILWSVVISVFLFVKAKRQGSGLSSGGNTGNAIYDFFMGHQL 445
Query: 519 AQDIGATDWEKNKKISQLLLGKAMDTFC 602
IG D++ ++ LLG M FC
Sbjct: 446 NPRIGNFDFKFFCEMRPGLLGWMMINFC 473
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,694,146
Number of Sequences: 59808
Number of extensions: 381413
Number of successful extensions: 852
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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