Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e01f
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical pr...    74   7e-14
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   4.5  
AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical...    28   4.5  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    28   4.5  

>L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK688.3 protein.
          Length = 214

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
 Frame = +3

Query: 273 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVV 452
           K++CVG NYKDH  E     P+ P +F K  ++ +   + I         +  E+EL VV
Sbjct: 13  KIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQN-LHQEVELGVV 71

Query: 453 IGKKASKVDSSHAFDYVLGYTIAQDIGATDW--EKNKKISQLLLGKAMDTFCP 605
           I KKAS++  S A DY+ GYT+A D+ A D+  E  K  +   L K+ D  CP
Sbjct: 72  ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAPWFLAKSFDGSCP 124


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 279 LCVGLNYKDHCEEQKLTPPELP-FIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVI 455
           L +  NY     +Q LT   +  +++N+F S ++  N  I +   +    +C ++++VVI
Sbjct: 67  LLLSYNYMSSTLDQTLTITTIDIYVYNEFQSLLIAINRFIAMYAPLHYNKLCSVKVSVVI 126


>AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5a protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 3   VKISATFEEVKTGNLKMKLLQFSYKNSDGIRAGFLDGDN 119
           VKI+  +E +K  NL+ K  QF  K   G+  GF  G+N
Sbjct: 63  VKINKAYEVLKDENLRKKYDQFGEK---GLEDGFQGGNN 98


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 375 VGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKN 554
           + P+D   L  + ++ ++CEIE    + +   K D     +YVL   +  ++   D E+ 
Sbjct: 427 IAPSDLTHLFHNETEIIICEIEYLQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLD-ERF 485

Query: 555 KKISQ 569
           + I Q
Sbjct: 486 EDIKQ 490


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 375 VGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKN 554
           + P+D   L  + ++ ++CEIE    + +   K D     +YVL   +  ++   D E+ 
Sbjct: 427 IAPSDLTHLFHNETEIIICEIEYLQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLD-ERF 485

Query: 555 KKISQ 569
           + I Q
Sbjct: 486 EDIKQ 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,848
Number of Sequences: 27780
Number of extensions: 294180
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)