Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11e01f
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15940.1 68417.m02420 fumarylacetoacetate hydrolase family pr...    71   8e-13
At3g16700.1 68416.m02133 fumarylacetoacetate hydrolase family pr...    63   1e-10
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    30   1.4  
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...    29   2.4  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    29   2.4  
At3g09830.2 68416.m01173 protein kinase, putative similar to pro...    29   3.2  
At3g09830.1 68416.m01172 protein kinase, putative similar to pro...    29   3.2  
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)              28   4.2  
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...    28   4.2  
At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase f...    28   4.2  
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi...    28   5.5  
At2g14910.2 68415.m01696 expressed protein                             27   7.3  
At2g14910.1 68415.m01695 expressed protein                             27   7.3  
At5g59110.1 68418.m07407 subtilisin-like serine protease-related...    27   9.6  
At1g49840.1 68414.m05588 expressed protein contains Pfam profile...    27   9.6  

>At4g15940.1 68417.m02420 fumarylacetoacetate hydrolase family
           protein contains Pfam domain, PF01557:
           fumarylacetoacetate hydrolase family protein
          Length = 222

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
 Frame = +3

Query: 273 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVV 452
           K++CVG NY  H +E     P+ P IF K  S+ +    TI++   +  ++  E+EL +V
Sbjct: 15  KIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPLD-SLHHEVELALV 73

Query: 453 IGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCP 605
           IG+KA  V  S A DY+ GY +A D+ A + + + K S L   + K  DTF P
Sbjct: 74  IGQKARDVPESIAMDYIGGYAVALDMTARELQASAKASGLPWTVAKGQDTFTP 126


>At3g16700.1 68416.m02133 fumarylacetoacetate hydrolase family
           protein contains Pfam domain, PF01557:
           fumarylacetoacetate hydrolase family protein
          Length = 224

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
 Frame = +3

Query: 273 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVV 452
           K++ VGLNY  H +E     P+ P +F K  S+ +    TI++   +  ++  E+EL VV
Sbjct: 15  KIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPLD-SLHHEVELAVV 73

Query: 453 IGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCP 605
           IG+KA  V    A +Y+ GY +A D+ A + + +   S L   L K  DTF P
Sbjct: 74  IGQKARDVPERLAMNYIGGYALALDMTARELQVSAMASGLPCTLAKGQDTFTP 126


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = +3

Query: 285 VGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKL-------KMDVSKAVVCEIEL 443
           + LN  D+ E     P      F  FP  +VGP + +KL       K++  K +V +  L
Sbjct: 661 LNLNINDY-ERVCQVPKRKGANFRDFPGVIVGPGNVVKLEEGKERVKLESGKTLVPDYAL 719

Query: 444 TVVIGK 461
           T V GK
Sbjct: 720 TYVDGK 725


>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 357 KFPSTVVGPNDTIKLKMDVSKAV 425
           ++P  ++ PNDTIKL ++ +K V
Sbjct: 148 RYPDPLIKPNDTIKLDLEANKIV 170


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +3

Query: 414 SKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQ 569
           +++ + EI + +++  + S + SS  FDYV  Y  A+ IGA   E+ KK ++
Sbjct: 700 ARSALVEIIIFMLVSLQ-SYMFSSQEFDYVSRYLEAEQIGAIVREQEKKAAR 750


>At3g09830.2 68416.m01173 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 418

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = -2

Query: 527 ILGYCVAEDIIKGMR*IYFTGFLPDYNRQFYLADHSFTYI 408
           +LGYC AED  +G++ +    ++P+ + +F+L+  S T +
Sbjct: 149 LLGYC-AEDDERGIQRLLVYEYMPNRSVEFHLSPRSLTVL 187


>At3g09830.1 68416.m01172 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 418

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = -2

Query: 527 ILGYCVAEDIIKGMR*IYFTGFLPDYNRQFYLADHSFTYI 408
           +LGYC AED  +G++ +    ++P+ + +F+L+  S T +
Sbjct: 149 LLGYC-AEDDERGIQRLLVYEYMPNRSVEFHLSPRSLTVL 187


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 357 KFPSTVVGPNDTIKLKMDVSKAV 425
           ++P  ++ PNDTIKL ++ +K V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIV 170


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 357 KFPSTVVGPNDTIKLKMDVSKAV 425
           ++P  ++ PNDTIKL ++ +K V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIV 170


>At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 331

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 437 YLADHSFTYIHF*LDGVVWSHHSTRKFVEYKRKFWRRQF 321
           Y+ D +FT   + L  +VWSH +    V Y+   W R F
Sbjct: 249 YVGDSAFT--KYRLVSMVWSHGNLYNCVAYENNRWVRHF 285


>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 895

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 432 EIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQLLLG 581
           E+EL  V  KKA +++ S A  Y+    I  ++G  +W++ ++  +L+ G
Sbjct: 836 EVELGKVAAKKAIELEPSDAGAYISLSNILAEVG--EWDEVEETRKLMKG 883


>At2g14910.2 68415.m01696 expressed protein
          Length = 366

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 342 PFIFNKFPSTVVGPNDTIKLKMDVSKAVVCE 434
           P + +KFP++ V P +T+K K D   A + E
Sbjct: 299 PKMHSKFPASEVPPTETVKAKSDEDCAELVE 329


>At2g14910.1 68415.m01695 expressed protein
          Length = 386

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 342 PFIFNKFPSTVVGPNDTIKLKMDVSKAVVCE 434
           P + +KFP++ V P +T+K K D   A + E
Sbjct: 299 PKMHSKFPASEVPPTETVKAKSDEDCAELVE 329


>At5g59110.1 68418.m07407 subtilisin-like serine protease-related
           similar to prepro-cucumisin GI:807698 from [Cucumis
           melo], subtilisin-like protease C1 [Glycine max]
           GI:13325079
          Length = 172

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 270 DKVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELT 446
           +K L   LNY     + + +   L   FN+  + V  PN T K K+ +++     +++T
Sbjct: 59  NKTLPRNLNYPSMSAQLRRSESSLTVTFNRTVTNVGTPNSTYKSKVVLNQGSKLNVKVT 117


>At1g49840.1 68414.m05588 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 494

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 326 DASRTSFYIQQIS*YCGGTKRHHQVKN 406
           + S   + +QQ +  CGG K H+ +KN
Sbjct: 171 ETSSAQYILQQYTAACGGHKLHNAIKN 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,478
Number of Sequences: 28952
Number of extensions: 276024
Number of successful extensions: 664
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)