Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d24r
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 36 0.028
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 32 0.45
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 30 2.4
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 30 2.4
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.6
SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047) 28 7.4
SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14) 28 7.4
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 36.3 bits (80), Expect = 0.028
Identities = 28/101 (27%), Positives = 47/101 (46%)
Frame = -2
Query: 578 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 399
V+AP+E+A+ AP +E VE T EE+E E + S E +++ V + P
Sbjct: 35 VEAPIEEAE---AP----EEEVEATVEEVEAPMEEAAASVEEAEVPIEKAETQPVDTEGP 87
Query: 398 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQ 276
+E E+A+ D E + + S + P+VE +
Sbjct: 88 VENAETSFEEAEAADEETEEPVKEAEGSFEEAEAPVVETEE 128
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = -2
Query: 578 VDAPVEDADLQVAPVNIVDEPVEKTN---EEIENDSEVGSISWVEYPAELDEDGNGLVIV 408
VDAPV++A+ AP + PVE++ E+ E E + E A ++E
Sbjct: 725 VDAPVKEAE---APAGEAEAPVEESEVLVEKAEASVEEAEVPVDEVEASVEEAEAPAHEA 781
Query: 407 DLPIEAQPEDLEKAQL----VDLPVENVAEPE 324
+ P+E +E+A++ ++PVE PE
Sbjct: 782 EAPVEEAKSSIEEAEVPVEEAEVPVEEAEVPE 813
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = -2
Query: 575 DAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPI 396
+APVE++++ V E E +E+E E E A ++E + + ++P+
Sbjct: 740 EAPVEESEVLVEKAEASVEEAEVPVDEVEASVEEAEAPAHEAEAPVEEAKSSIEEAEVPV 799
Query: 395 EAQPEDLEKAQLVDLPVENVAEPEDL 318
E +E+A++ + E AE D+
Sbjct: 800 EEAEVPVEEAEVPEKGAEAPAEGSDV 825
Score = 33.9 bits (74), Expect = 0.15
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 7/141 (4%)
Frame = -2
Query: 707 VEXLDAPVEDADVLADSVNFXXXXXXXXXXXXXXXXXXSFVDNVDAPVEDADLQVAPVNI 528
VE +AP+E+A+ + V V+ V+APVE+A V +
Sbjct: 1125 VEITEAPIEEAEAPDERVESSVEEAEAPEEEVKAP-----VEEVEAPVEEAVASVEEAEV 1179
Query: 527 VDEPVEKTNEEIENDSE--VGSISWVEYPAE-----LDEDGNGLVIVDLPIEAQPEDLEK 369
E E E+ E E S+ E P E +ED + P+EA P
Sbjct: 1180 PIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEAPAEKTEKPVEAGP----S 1235
Query: 368 AQLVDLPVENVAEPEDLSPVQ 306
Q + PV+ P + + VQ
Sbjct: 1236 VQEAEAPVKETERPVEEAEVQ 1256
Score = 32.7 bits (71), Expect = 0.34
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 2/147 (1%)
Frame = -2
Query: 707 VEXLDAPVEDADVLADSVNFXXXXXXXXXXXXXXXXXXSFVDNVDAPVEDADLQVAPVNI 528
V+ +APVE+A+ A+ ++ +AP E + V
Sbjct: 1097 VKEAEAPVEEAEAPAEETEEPVKEAEASVEITEAP-----IEEAEAPDERVESSVEEAEA 1151
Query: 527 VDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLP 348
+E V+ EE+E E S E ++E + P+E ++KA + P
Sbjct: 1152 PEEEVKAPVEEVEAPVEEAVASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKA---EAP 1208
Query: 347 VENVAEP--EDLSPVQVVNPIVENSQS 273
VE P ED +P + VE S
Sbjct: 1209 VEETEAPFEEDEAPAEKTEKPVEAGPS 1235
Score = 29.5 bits (63), Expect = 3.2
Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Frame = -2
Query: 683 EDADVLADSVNFXXXXXXXXXXXXXXXXXXSFVDNVDAPVEDADLQVAPVNIVDEPVEKT 504
E+A+ L + + V+ ++AP+E A A VD PV++
Sbjct: 673 EEAETLVEETKVEEDKAPIQEAEASVKKAEATVEEIEAPIERAKEVEAQSKEVDAPVKEA 732
Query: 503 NE---EIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLE-KAQLVDLPVENV 336
E E E + + A ++E V VD +EA E+ E A + PVE
Sbjct: 733 EAPAGEAEAPVEESEVLVEKAEASVEE---AEVPVD-EVEASVEEAEAPAHEAEAPVEEA 788
Query: 335 AEPEDLSPVQVVNPIVENSQSEYPGK 258
+ + V V V ++E P K
Sbjct: 789 KSSIEEAEVPVEEAEVPVEEAEVPEK 814
Score = 27.9 bits (59), Expect = 9.8
Identities = 26/107 (24%), Positives = 48/107 (44%)
Frame = -2
Query: 587 VDNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV 408
V+N +A VE+A++ P E+T +E +G E + +E + V
Sbjct: 965 VEN-EAAVEEAEIPAEEHPQARTPAEETEAPVEEAEALGETPIEEAESPEEEVEATVEEV 1023
Query: 407 DLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEY 267
+ PIE +E+A ++P+E + PV VEN+++ +
Sbjct: 1024 EAPIEEAAASVEEA---EVPIEKA----ETQPVDTEGQ-VENAETSF 1062
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 32.3 bits (70), Expect = 0.45
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Frame = -2
Query: 566 VEDADLQVAPVNIVDEPVEKTNEEIENDSE------VGSISWVEYPAELDEDGNGLVIVD 405
+E DL++ PVN D V + ++IE D++ + I V+Y ++ +G + D
Sbjct: 1024 MEPKDLEL-PVNEPDVEVYEPQQDIEIDADGLRAQILSPIMSVDYDSDASANGGHMRRED 1082
Query: 404 LPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNP--IVENSQSEYPGKRY 252
E P D+ K P +AE E + V V P E + EY + Y
Sbjct: 1083 PQNEESPPDIAKDDKPLSPEAPIAEAESILLVAEVEPGAKFETCEPEYLKEDY 1135
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 29.9 bits (64), Expect = 2.4
Identities = 28/87 (32%), Positives = 39/87 (44%)
Frame = -2
Query: 578 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 399
VD P+ D P+ EPV+K +NDS+ SI+ P + G D P
Sbjct: 862 VDKPIAKKDSDDKPITAEGEPVDK--PIAKNDSDDKSITAEGEPDDKPITTKG-ESEDAP 918
Query: 398 IEAQPEDLEKAQLVDLPVENVAEPEDL 318
I A D EKA + ++V E +DL
Sbjct: 919 ITATLNDPEKA-IASGGEKSVIEKDDL 944
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 322 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGY 453
SS S++ S+ S+S + S SS +S S+ +S SSS S GY
Sbjct: 589 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASLGY 632
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 542 RLVNRRPQLEHRRCLRS*QNQPG-H-RRPQLEHRRCLRSLQNQPGHRRPXLEHR 697
RL RRP+L HRR R +P H RRP+L RR + HRR HR
Sbjct: 163 RLHTRRPRL-HRRRTRLHTRRPRLHTRRPRLHRRRPRLHTRRPRRHRRRPRLHR 215
>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 81 RFRNSLKDTQTF-SKKV*KN*LLI*EMLFIKYRKIMNVNV 197
RFRNS+KDT+ F S V + L+ + I+ RK+ N V
Sbjct: 111 RFRNSVKDTRVFRSSDVGSDHYLVCATVKIRLRKVQNGRV 150
>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2735
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 240 CSVRVS-FAGVFTLTVLNDGVNYL 308
CS+RV+ + TLTV DGVNY+
Sbjct: 2036 CSIRVNRYRNAATLTVEKDGVNYI 2059
>SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)
Length = 594
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 457 LNILLNWTKMETDLLLLIYLLR-HNPKI*RKPSLLTFPSKMSLNQKT 320
+ + L W K E DL L+YLL KP++L S++ N++T
Sbjct: 395 VTVSLPWKKSEEDLSYLLYLLSVQMSNNTDKPAVLESTSRVGANKRT 441
>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
Length = 1071
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +2
Query: 530 CSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPXLEHRGFLR 709
C R N+R ++H CL + Q G + +EH C + Q G + ++H
Sbjct: 524 CQSSRY-NKRA-MDHTLCLLNSQQSTGCDQDSIEHTPCSLNSQQSTGCGKDTIDHTPCSL 581
Query: 710 SLQSXAG 730
+ Q G
Sbjct: 582 NSQQSTG 588
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 7.4
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = -2
Query: 584 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVD 405
+ V+ E+ + + + + +E EK NEE EN+ E + E ED G
Sbjct: 48 EEVEEEEEEEEEKEDEIEVEEEEEEKENEEEENEDE------EDEEEEEGEDPKG----- 96
Query: 404 LPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQV 303
P+E+ E + KA + DL + PE++ V++
Sbjct: 97 PPLESYSEQMSKALIGDL---SAKFPENVKVVRI 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,572,331
Number of Sequences: 59808
Number of extensions: 378362
Number of successful extensions: 1055
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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