Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d24r
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59370.1 68416.m06621 expressed protein hypothetical protein ... 33 0.16
At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related... 33 0.28
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 32 0.49
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.86
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma... 31 1.1
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 30 2.0
At4g21450.2 68417.m03102 vesicle-associated membrane family prot... 30 2.0
At4g21450.1 68417.m03103 vesicle-associated membrane family prot... 30 2.0
At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein s... 30 2.0
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 29 2.6
At1g64790.1 68414.m07346 translational activator family protein ... 29 3.5
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 3.5
At5g45830.1 68418.m05637 expressed protein low similarity to tum... 29 4.6
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 29 4.6
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR... 28 6.0
At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family... 28 8.0
>At3g59370.1 68416.m06621 expressed protein hypothetical protein
F12F1.4 - Arabidopsis thaliana, EMBL:AC002131
Length = 95
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -2
Query: 587 VDNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV 408
V +V + + ++ P + E EKTNE+ E + V E P ++E+ +
Sbjct: 9 VTSVAVEIVETEVNQHPEEVFVEDAEKTNEDEEEKAAV----ITETPTVVEEEKKAEEVT 64
Query: 407 DLPIEAQPEDLEKAQLVDLPVENVA 333
+ P E + E LE+ Q E VA
Sbjct: 65 ETPEEKKTEALEEKQTEVAAAEEVA 89
>At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 572
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 566 VEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPI 396
VE+ L + + + E N++ + S +SWVE P + + + I DLPI
Sbjct: 277 VEELKLNINKLRFSAKLAEAANDDYSSSSSSSIVSWVEIPISMSINIGEISIPDLPI 333
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -2
Query: 491 ENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLS 315
E DS V S A+++ G+V+V EA ++ +K VD + N+ EP+DL+
Sbjct: 462 EGDSMVDSSVVDSVDADINVAEPGVVVVGAAKEAVIKEDDKDDEVDKTISNIEEPDDLT 520
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 31.1 bits (67), Expect = 0.86
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -2
Query: 473 GSISWVEYPA-ELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVN 297
G+ S+ + A L D L I D ++ +L ++ DLPV EPE+L +VVN
Sbjct: 141 GASSFCAFAAFPLLRDKGYLPIQDSRLDEPVTELPPLKVKDLPVMETNEPEEL--YRVVN 198
Query: 296 PIVENSQS 273
+VE ++S
Sbjct: 199 DMVEGAKS 206
>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
PF04937: Protein of unknown function (DUF 659)
Length = 433
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 455 EYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQV 303
E P+E DE+ NG + P E EDLE + D+ ++ E ++ V V
Sbjct: 375 EGPSERDEEPNGEPVYQTPNEKPREDLESHEEHDITIDIEFESDNEQVVNV 425
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -2
Query: 512 EKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVA 333
EK EE E + S+ E PAE D IE + ED EK + D +
Sbjct: 331 EKEEEEQEEEEAEHSVQ-PEEPAEADNQKENSEGDQPLIEEEEEDQEKIEEEDAKPSFLI 389
Query: 332 EPEDLSPVQVVNP 294
+ +DL + +NP
Sbjct: 390 DTDDLLGLNEINP 402
>At4g21450.2 68417.m03102 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 212
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 370 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 465
F SSG + S TSPFPS ++S+ S+ L
Sbjct: 23 FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54
>At4g21450.1 68417.m03103 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 295
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 370 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 465
F SSG + S TSPFPS ++S+ S+ L
Sbjct: 23 FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54
>At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein
similar to gibberellin 20-oxidase GI:4164141 from
[Lactuca sativa]; contains Pfam domain PF03171
2OG-Fe(II) oxygenase superfamily
Length = 385
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 308 QVVNPIVENSQSEYPGKRYPDATWR*IIYFS-SFYLN*NIYIHNFS 174
+++ P E + E ++YPD TW + F+ S Y N +HNFS
Sbjct: 328 KIIVPPPELVEGEEASRKYPDFTWAQLQKFTQSGYRVDNTTLHNFS 373
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 322 SSGSATFSTGRSTSW--AFSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 465
SS S +TG S S+ A S S SI +T +SPF SS+SAG + L
Sbjct: 243 SSSSIFGATGSSPSFSVASSASGSSPSIFGATGSSPFFGSSSSAGSTPSL 292
>At1g64790.1 68414.m07346 translational activator family protein
similar to HsGCN1 [Homo sapiens] GI:2282576
Length = 2440
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 532 TSWMNQLKRRMRKSRMTVKLARSAGLNILLNWTKMETDLLLLIYLLRHNPKI*RKPSLLT 353
TS + L + + ++++V L L+ NW +L + LL+HNP SL +
Sbjct: 2224 TSMLGVLSQYLEAAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFS 2283
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/99 (26%), Positives = 44/99 (44%)
Frame = -2
Query: 578 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 399
+D P +D Q+A + P K EE+++D + WV EL VI +
Sbjct: 162 LDDPFDDPP-QLAEMMPDASPEGKPKEEVKDDVRLED-DWVPMDEELGAQELEEVIREKA 219
Query: 398 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVEN 282
+ LE + D+P V P+++ V +NP+ E+
Sbjct: 220 AHSSAVVLES--IGDIPEAEVKPPDNVLFVCKLNPVTED 256
>At5g45830.1 68418.m05637 expressed protein low similarity to
tumor-related protein [Nicotiana glauca x Nicotiana
langsdorffii] GI:688423
Length = 291
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = -2
Query: 557 ADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPED 378
A + V V I+DE + T + + I E++ G V+VD ++ Q E
Sbjct: 147 AKINVLHVKIIDEEEKMTKKVSSLQEDAADIPIATVAYEMENVGEPNVVVDQALDKQEEA 206
Query: 377 LEK--AQLVDLPVENVAEPED-LSPVQ 306
+ + + +L V+ +A+ LSPVQ
Sbjct: 207 MARLLVEADNLRVDTLAKILGILSPVQ 233
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 28.7 bits (61), Expect = 4.6
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = -2
Query: 533 NIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVD 354
N V P+ E +ND S+S + + D+DG G + DL +AQ + ++ +D
Sbjct: 1315 NDVTGPI--AGNETDNDD---SVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMD 1369
Query: 353 L---PVENVAEPEDLSPVQVVNPIVENSQSEYPGKRYPD 246
+ EP +S V+ EN +E + P+
Sbjct: 1370 YEENSEDETNEPSSISGVEDPEMDSENEDTEVSKEDTPE 1408
>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 897
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 600 ISRDIGVLNWSIDVVYEVYRISQDIGVLXWSIEXFYEAYRVQPGN-RHSHWSFDISSK 770
+S++ +WS+D + E+ + +DIG + ++ FYE V P + R+ F I+ K
Sbjct: 73 LSKNYASSSWSLDELLEILKCKEDIGQIVMTV--FYE---VDPSDVRNQTGDFGIAFK 125
>At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family
protein
Length = 575
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -2
Query: 518 PVEKT-NEEIENDSEVGSISW-VEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPV 345
PVE+ EE +++E I++ E P + L + P+ + + + P+
Sbjct: 302 PVEEVPKEEALSNTETHQIAYGQEAPLSVFGLVPSLSAIGQPVNTEAAETQPGNSNSPPI 361
Query: 344 ENVAEPEDLSPVQVVNPIVENSQSEYPGKRYPDATWR*IIYFSSFYLN*NIYIHNF 177
V+ P D S + + +YP +P Y+S +Y+ YIH F
Sbjct: 362 SLVSYPPDQSSIAAATQQTNFLRQQYPPNFFPYG------YYSPYYMP-PPYIHQF 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,008
Number of Sequences: 28952
Number of extensions: 271500
Number of successful extensions: 916
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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