Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d22r
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56513| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_48213| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_44705| Best HMM Match : Ada_Zn_binding (HMM E-Value=8.9) 29 2.0
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_10660| Best HMM Match : RVP (HMM E-Value=6.5) 29 2.0
SB_50299| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 2.0
SB_29085| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 2.0
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 2.0
SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 28 4.5
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 28 6.0
>SB_56513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 23 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSNTRITAYGGHEVQHYGTCNLTLL 81
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 82 HNGQSSPH-EFHVVNTTG 98
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 342 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 400
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 401 HNGQSSPH-EFHVVNTTG 417
>SB_48213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 23 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 81
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 82 HNGQSSPH-EFHVVNTTG 98
>SB_44705| Best HMM Match : Ada_Zn_binding (HMM E-Value=8.9)
Length = 269
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 23 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 81
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 82 HNGQSSPH-EFHVVNTTG 98
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 168 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 226
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 227 HNGQSSPH-EFHVVNTTG 243
>SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 226 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 284
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 285 HNGQSSPH-EFHVVNTTG 301
>SB_10660| Best HMM Match : RVP (HMM E-Value=6.5)
Length = 304
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 27 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 85
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 86 HNGQSSPH-EFHVVNTTG 102
>SB_50299| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 465
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 27 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 85
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 86 HNGQSSPH-EFHVVNTTG 102
>SB_29085| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 408
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 23 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 81
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 82 HNGQSSPH-EFHVVNTTG 98
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 329 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 387
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 388 HNGQSSPH-EFHVVNTTG 404
>SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 268 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 326
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 327 HNGQSSPH-EFHVVNTTG 343
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 329 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 387
Query: 254 HGGLGSTFAAFDITNAAG 201
H G S F + N G
Sbjct: 388 HNGQSSPH-EFLVVNTTG 404
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 27.9 bits (59), Expect = 6.0
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -2
Query: 434 LNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLT 255
++ G GN L ++ S+ PL+L AP+ TRI A EV + ++ L
Sbjct: 268 IDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSL-APSDTRITAYGGHEVQHYGTCNLTLL 326
Query: 254 HGGLGS--TFAAFDITNAAGRGL 192
H G S F D T GL
Sbjct: 327 HNGQSSPHEFHVVDTTGPTILGL 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,668
Number of Sequences: 59808
Number of extensions: 334674
Number of successful extensions: 542
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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