Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d22r
         (561 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB019437-26|BAA75025.1|  117|Homo sapiens immunogloblin heavy ch...    30   4.8  
AY452138-1|AAS15727.1|  185|Homo sapiens immunoglobulin heavy ch...    30   6.4  
AM082308-1|CAL06454.1|  101|Homo sapiens immunoglobulin heavy ch...    29   8.5  

>AB019437-26|BAA75025.1|  117|Homo sapiens immunogloblin heavy chain
           variable region protein.
          Length = 117

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 359 SWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLTHGGLGSTFAAFD---ITNAAGRGLN 189
           SW   + +F      +  + + E      GS+RL+    G TF+++    +  A G+GL 
Sbjct: 6   SWVFLVAIFKGVQCEVQLVESGEGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLE 65

Query: 188 Y 186
           Y
Sbjct: 66  Y 66


>AY452138-1|AAS15727.1|  185|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 359 SWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLTHGGLGSTFAAFD---ITNAAGRGLN 189
           SW  P+ +F      +  + + E      GS+RL+    G TF+++    +  A G+GL 
Sbjct: 2   SW-FPVAIFKGVQCEVQLVESGEGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLE 60

Query: 188 Y 186
           Y
Sbjct: 61  Y 61


>AM082308-1|CAL06454.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -2

Query: 272 GSIRLTHGGLGSTFAAFDIT---NAAGRGLNY 186
           GS+RL+  G G TF+++D+T    A G+GL +
Sbjct: 19  GSLRLSCAGSGFTFSSYDMTWVRQAPGKGLEW 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,747,533
Number of Sequences: 237096
Number of extensions: 1576652
Number of successful extensions: 2983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2982
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)