Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d22r
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02510.1 68417.m00343 chloroplast outer membrane protein, put...    28   3.7  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    28   4.9  
At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    27   6.5  
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ...    27   6.5  
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ...    27   8.6  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    27   8.6  

>At4g02510.1 68417.m00343 chloroplast outer membrane protein, putative
            similar to chloroplast protein import component Toc159
            [Pisum sativum] GI:8489806, chloroplast outer envelope
            protein 86 [Pisum sativum] GI:599958, GTP-binding protein
            [Pisum sativum] GI:576509
          Length = 1503

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 296  REVGASQSGSIRLTHGGLGSTFAAFDITNAAGRGLNYRV 180
            +E       S+   HG  GST A FDI N  G+ L Y V
Sbjct: 1301 KEFNIHLDSSVSAKHGENGSTMAGFDIQN-VGKQLAYVV 1338


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 369  RSTDEILTSQKSILVSDNP*VQGRSPKG 452
            +  D+I++  K I VSD   V G++PKG
Sbjct: 2025 KKVDDIMSHMKEINVSDASRVSGQAPKG 2052


>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 384 FRPCFYGVIVGSPIDFVCAYRYSHQ 310
           F  C    + G+PID+V  +RY HQ
Sbjct: 166 FAYCGAQALQGNPIDWVSTHRYHHQ 190


>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
           delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
           GI:2970034 from [Arabidopsis thaliana]
          Length = 305

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 384 FRPCFYGVIVGSPIDFVCAYRYSHQ 310
           F  C    I G PID+V  +RY HQ
Sbjct: 101 FAYCGLLAIQGDPIDWVSTHRYHHQ 125


>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
           delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
           [Arabidopsis thaliana]
          Length = 307

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 375 CFYGVIVGSPIDFVCAYRYSHQ 310
           C    I G PID+V  +RY HQ
Sbjct: 106 CALLAIQGDPIDWVSTHRYHHQ 127


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 190 FNPLPAAFVMSKAAKVEPSPP*VSLIEP 273
           F+P P +F MS   +V P PP  S + P
Sbjct: 423 FSPPPPSFKMSPTVRVLPPPPPSSKMSP 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,623
Number of Sequences: 28952
Number of extensions: 229813
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)