Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d22f
         (586 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   3.2  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   7.3  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   9.6  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 101  DFDSFRRSTLNLGVIGNQDRLLRSENFVRASMVSSWAHPLTLFAPTGTRI 250
            D D  R S LNL    N      +E  VRA++ ++      L++PTG R+
Sbjct: 1465 DVDHVRFSPLNLNFRANVYTPDTAE--VRATLCNNGLLKQNLYSPTGKRV 1512


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 428 LLLFSLHCVLNVPKFPPCSSIPCRLRS 348
           + +F LH VL    FP  S  PC L S
Sbjct: 56  IFMFLLHFVLFSFSFPFFSFAPCTLAS 82


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 389 KFPPCSSIPCRLRS*CQKRQRWNRVR 312
           ++P C S P R RS   +   W R R
Sbjct: 267 RWPSCRSPPARRRSRSTRPTSWPRSR 292


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,163
Number of Sequences: 2352
Number of extensions: 11887
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55927431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)